Publications
Scientific Papers, Journals, Presentations, Posters, and Technical Reports
2024
- Callaghan, S., Maechling, P. J., Silva, F., Su, M.-H., Milner, K. R., Graves, R. W., Olsen, K. B., Cui, Y., Vahi, K., Kottke, A., Goulet, C. A., Deelman, E., Jordan, T. H., & Ben-Zion, Y. (2024). Corrigendum: Using open-science workflow tools to produce SCEC CyberShake physics-based probabilistic seismic hazard models. Frontiers in High Performance Computing, 2. https://doi.org/10.3389/fhpcp.2024.1497384
[BibTex] - Catalfamo, A., Aral, A., Brandic, I., Deelman, E., & Villari, M. (2024). Machine Learning Workflows in the Computing Continuum for Environmental Monitoring. Computational Science – ICCS 2024: 24th International Conference, Malaga, Spain, July 2–4, 2024, Proceedings, Part V, 368–382. https://doi.org/10.1007/978-3-031-63775-9_27
[BibTex] - Cranganore, S. S., De Maio, V., Brandic, I., & Deelman, E. (2024). Paving the way to hybrid quantum–classical scientific workflows. Future Generation Computer Systems, 158, 346–366. https://doi.org/https://doi.org/10.1016/j.future.2024.04.030 (Funding Acknowledgments: NSF 2331153)
[BibTex] - Hasan, M., Kee, K. F., Okunloye, O., & Deelman, E. (2024). Decision Strategies during a Science Crisis: How Science Organizations Made Adaptations during the Pandemic. https://wearecrisiscomm.com/2024-icrcc-proceedings/enzc7642/
[BibTex] - Jin, H., Papadimitriou, G., Raghavan, K., Zuk, P., Balaprakash, P., Wang, C., Mandal, A., & Deelman, E. (2024). Large Language Models for Anomaly Detection in Computational Workflows: from Supervised Fine-Tuning to In-Context Learning. https://arxiv.org/abs/2407.17545
[BibTex] - Jin, H., Papadimitriou, G., Raghavan, K., Zuk, P., Balaprakash, P., Wang, C., Mandal, A., & Deelman, E. (2024). Large Language Models for Anomaly Detection in Computational Workflows: From Supervised Fine-Tuning to In-Context Learning. Proceedings of the International Conference for High Performance Computing, Networking, Storage, and Analysis. https://doi.org/10.1109/SC41406.2024.00098
[BibTex] - Poczekajlo, P., Moroz, L., Deelman, E., & Gepner, P. (2024). Modified CORDIC Algorithm for Givens Rotator. In L. Franco, C. de Mulatier, M. Paszynski, V. V. Krzhizhanovskaya, J. J. Dongarra, & P. M. A. Sloot (Eds.), Computational Science – ICCS 2024 (pp. 101–114). Springer Nature Switzerland. https://doi.org/10.1007/978-3-031-63778-0_8
[BibTex] - Raghavan, K., Papadimitriou, G., Jin, H., Mandal, A., Kiran, M., Balaprakash, P., & Deelman, E. (2024). Advancing Anomaly Detection in Computational Workflows with Active Learning. https://arxiv.org/abs/2405.06133
[BibTex] - Roa, C., Rynge, M., Olaya, P., Vahi, K., Miller, T., Griffioen, J., Knuth, S., Goodhue, J., Hudak, D., Romanella, A., Llamas, R., Vargas, R., Livny, M., Deelman, E., & Taufer, M. (2024). End-to-end Integration of Scientific Workflows on Distributed Cyberinfrastructures: Challenges and Lessons Learned with an Earth Science Application. Proceedings of the IEEE/ACM 16th International Conference on Utility and Cloud Computing. https://doi.org/10.1145/3603166.3632142 (Funding Acknowledgments: NSF 1664162, 1841758, 2028923, 2103845, 2103836, 2138811, 2223704, 2330582, 2331152, 2334945, 2138286)
[BibTex] - Safri, H., Papadimitriou, G., & Deelman, E. (2024). Dynamic Tracking, MLOps, and Workflow Integration: Enabling Transparent Reproducibility in Machine Learning. 2024 IEEE 20th International Conference on e-Science (e-Science), 1–10. https://doi.org/10.1109/e-Science62913.2024.10678658
[BibTex] - Safri, H., Papadimitriou, G., Desprez, F., & Deelman, E. (2024). A Workflow Management System Approach To Federated Learning: Application to Industry 4.0. 2024 20th International Conference on Distributed Computing in Smart Systems and the Internet of Things (DCOSS-IoT). https://doi.org/https://doi.org/10.1109/DCOSS-IoT61029.2024.00047 (Funding Acknowledgments: DE-SC0022328 and NSF 2138286, 2106147)
[BibTex] - Seidel, E., Randles, A., Arthur, R., Bergman, K., Carlson, B., Deelman, E., Grout, R., Hendrickson, B., & Reed, D. (2024). 2024 Advanced Scientific Computing Advisory Committee (ASCR): Facilities Subcommittee Recommendations. https://doi.org/10.2172/2370379
[BibTex] - Wyrzykowski, R., & Deelman, E. (2024). Guest Editor’s note: Special issue on challenges and solutions for porting applications to next-generation high performance computing systems. The International Journal of High Performance Computing Applications, 38(1), 3–4. https://doi.org/10.1177/10943420231224509
[BibTex]
2023
- Afle, C., Miles, P. R., Caino-Lores, S., Capano, C. D., Tews, I., Vahi, K., Deelman, E., Taufer, M., & Brown, D. A. (2023). Reproducing the results for NICER observation of PSR J0030+0451. (Funding Acknowledgments: NSF 2207264, 2041977, 2041901, 2028923, 2028930, 1841399, and 1941443; DOE DE-AC52-06NA25396 )
[BibTex] - Caino-Lores, S., Cuendet, M., Marquez, J., Kots, E., Estrada, T., Deelman, E., Weinstein, H., & Taufer, M. (2023). Runtime Steering of Molecular Dynamics Simulations Through In Situ Analysis and Annotation of Collective Variables. Proceedings of the Platform for Advanced Scientific Computing Conference. https://doi.org/10.1145/3592979.3593420 (Funding Acknowledgments: NSF 1741057, 1841758, 2138811 and 2223704)
[BibTex] - Caino-Lores, S., Cuendet, M., Marquez, J., Kots, E., Estrada, T., Deelman, E., Weinstein, H., & Taufer, M. (2023). Runtime Steering of Molecular Dynamics Simulations Through In Situ Analysis and Annotation of Collective Variables. Proceedings of the Platform for Advanced Scientific Computing Conference. https://doi.org/10.1145/3592979.3593420 (Funding Acknowledgments: NSF 1741057, 1841758, 2138811, 2223704; ORLCF CSC427; XSEDE TG-CIS200053; IBM Shared University Research Award)
[BibTex] - Deelman, E. (2023). How is Artificial Intelligence Changing Science? 2023 IEEE 19th International Conference on e-Science (e-Science), 1–4. https://doi.org/10.1109/e-Science58273.2023.10254913 (Funding Acknowledgments: DOE DE-SC0022328 and NSF 1664162, 2138286)
[BibTex] - Dongarra, J., Deelman, E., Hey, T., Matsuoka, S., Sarakar, V., Bell, G., Foster, I., Keyes, D., & Kranzlmueller, D. et-al. (2023). Can the United States Maintain Its Leadership in High-Performance Computing?-A report from the ASCAC Subcommittee on American Competitiveness and Innovation to the ASCR Office. OSTI. https://doi.org/10.2172/1989107
[BibTex] - Esquivel Morel, A., Calyam, P., Qu, C., Gafurov, D., Wang, C., Thareja, K., Mandal, A., Lyons, E., Zink, M., Papadimitriou, G., & Deelman, E. (2023). Network Services Management using Programmable Data Planes for Visual Cloud Computing. 2023 International Conference on Computing, Networking and Communications (ICNC), 130–136. https://doi.org/10.1109/ICNC57223.2023.10074183 (Funding Acknowledgments: NSF 1950873, 2018074)
[BibTex] - Gesing, S., Deelman, E., Hildreth, M., Makhija, R., McDowell, M. A., Meyers, N. K., & Thain, D. (2023). VisDict: Improving Communication Via a Visual Dictionary in a Science Gateway. Computing in Science & Engineering, 25(2), 7–11. https://doi.org/10.1109/MCSE.2023.3275711 (Funding Acknowledgments: NSF 2216851, 2100561, and 2100636 )
[BibTex] - Grote, A., Lyons, E., Thareja, K., Papadimitriou, G., Deelman, E., Mandal, A., Calyam, P., & Zink, M. (2023). FlyPaw: Optimized Route Planning for Scientific UAVMissions. 2023 IEEE 19th International Conference on e-Science (e-Science), 1–10. https://doi.org/10.1109/e-Science58273.2023.10254831 (Funding Acknowledgments: NSF 2018074, 1939334)
[BibTex] - Jin, H., Raghavan, K., Papadimitriou, G., Wang, C., Mandal, A., Kiran, M., Deelman, E., & Balaprakash, P. (2023). Graph neural networks for detecting anomalies in scientific workflows. The International Journal of High Performance Computing Applications. https://doi.org/10.1177/10943420231172140 (Funding Acknowledgments: DOE DE-SC0022328, DE-AC02-06CH11357)
[BibTex] - Mahmud, I., Papadimitriou, G., Wang, C., Kiran, M., Mandal, A., & Deelman, E. (2023). Elephants Sharing the Highway: Studying TCP Fairness in Large Transfers over High Throughput Links. Proceedings of the SC ’23 Workshops of The International Conference on High Performance Computing, Network, Storage, and Analysis, 806–818. https://doi.org/10.1145/3624062.3624594 (Funding Acknowledgments: DOE DE-SC0022328. Best Paper Award.)
[BibTex] - Morel, A. E., Gafurov, D., Calyam, P., Wang, C., Thareja, K., Mandal, A., Lyons, E., Zink, M., Papadimitriou, G., & Deelman, E. (2023). Experiments on Network Services for Video Transmission using FABRIC Instrument Resources. IEEE INFOCOM 2023 - IEEE Conference on Computer Communications Workshops (INFOCOM WKSHPS), 1–6. https://doi.org/10.1109/INFOCOMWKSHPS57453.2023.10225817 (Funding Acknowledgments: NSF CNS-1950873, CNS-1647182 and OAC-2018074)
[BibTex] - Morel, A. E., Qu, C., Calyam, P., Wang, C., Thareja, K., Mandal, A., Lyons, E., Zink, M., Papadimitriou, G., & Deelman, E. (2023). FlyNet: Drones on the Horizon. IEEE Internet Computing, 27(3), 35–43. https://doi.org/10.1109/MIC.2023.3260440 (Funding Acknowledgments: NSF 1950873, 1647182, 2018074)
[BibTex] - Murillo, A., Brower, D., Hossain, S., Kee, K., Mandal, A., Nabrzyski, J., Scott, E., Virdone, N., Ewing, R., & Deelman, E. (2023). Broadening Student Engagement To Build the Next Generation of Cyberinfrastructure Professionals. Practice and Experience in Advanced Research Computing, 470–473. https://doi.org/10.1145/3569951.3597567 (Funding Acknowledgments: NSF 2127548)
[BibTex] - Papadimitriou, G., Jin, H., Wang, C., Raghavan, K., Mandal, A., Balaprakash, P., & Deelman, E. (2023). Flow-Bench: A Dataset for Computational Workflow Anomaly Detection. https://doi.org/10.48550/ARXIV.2306.09930
[BibTex] - Papadimitriou, G., Wang, C., Lyons, E., Thareja, K., Ruth, P., Villalobos, J. J., Rodero, I., Deelman, E., Zink, M., & Mandal, A. (2023). Dynamic Network-Centric Multi-cloud Platform for Real-Time and Data-Intensive Science Workflows. In F. Darema, E. P. Blasch, S. Ravela, & A. J. Aved (Eds.), Handbook of Dynamic Data Driven Applications Systems: Volume 2 (pp. 835–868). Springer International Publishing. https://doi.org/10.1007/978-3-031-27986-7_32 (Funding Acknowledgments: NSF 1826997)
[BibTex] - Rynge, M., Vahi, K., Alam, M. Z., Deelman, E., Miller, T., Livny, M., Knuth, S., Griffioen, J., Goodhue, J., Hudak, D., Ma, J., Pasquale, A., & Fein, L. (2023). ACCESS Pegasus: Bringing Workflows to the ACCESS Masses. Practice and Experience in Advanced Research Computing, 478–480. https://doi.org/10.1145/3569951.3597590 (Funding Acknowledgments: NSF 2138286, 1664162)
[BibTex] - Sahni, H., Carrillo-Cabada, H., Kots, E., Caino-Lores, S., Marquez, J., Deelman, E., Cuendet, M., Weinstein, H., Taufer, M., & Estrada, T. (2023). Online Boosted Gaussian Learners for In-Situ Detection and Characterization of Protein Folding States in Molecular Dynamics Simulations. 2023 IEEE 19th International Conference on e-Science (e-Science), 1–10. https://doi.org/10.1109/e-Science58273.2023.10254895 (Funding Acknowledgments: NSF 1757207, 1741057, 1841758, 2138811 and 2223704)
[BibTex]
2022
- Abhinit, I., Adams, E. K., Alam, K., Chase, B., Deelman, E., Gorenstein, L., Hudson, S., Islam, T., Larson, J., Lentner, G., Mandal, A., Navarro, J.-L., Nicolae, B., Pouchard, L., Ross, R., Roy, B., Rynge, M., Serebrenik, A., Vahi, K., … Filgueira, R. (2022). Novel Proposals for FAIR, Automated, Recommendable, and Robust Workflows. 2022 IEEE/ACM Workshop on Workflows in Support of Large-Scale Science (WORKS), 84–92. https://doi.org/10.1109/WORKS56498.2022.00016 (Funding Acknowledgments: NSF 1839900 and DOE DE-AC02-06CH11357, DE-AC05-00OR22725)
[BibTex] - Casanova, H., Ching Wong, Y., Pottier, L., & Ferreira da Silva, R. (2022). On the Feasibility of Simulation-driven Portfolio Scheduling for Cyberinfrastructure Runtime Systems. 2022 Job Scheduling Strategies for Parallel Processing (JSSPP), To appear. (Funding Acknowledgments: NSF 2106059 and 2106147, DOE DE-AC05-00OR22725)
[BibTex] - Choudhary, K., Nersisyan, N., Lin, E., Chandrasekaran, S., Mayani, R., Pottier, L., Murillo, A. P., Virdone, N. K., Kee, K., & Deelman, E. (2022). Application of Edge-to-Cloud Methods Toward Deep Learning. 2022 IEEE 18th International Conference on e-Science (e-Science), 415–416. https://doi.org/10.1109/eScience55777.2022.00065 (Funding Acknowledgments: NSF 2127548)
[BibTex] - Coleman, T., Casanova, H., Pottier, L., Kaushik, M., Deelman, E., & Ferreira da Silva, R. (2022). WfCommons: A framework for enabling scientific workflow research and development. Future Generation Computer Systems, 128, 16–27. https://doi.org/10.1016/j.future.2021.09.043 (Funding Acknowledgments: NSF 1923539, 2016610, 2016619, 2103489, 2103508, 1923621, 1664162, DOE DE-SC0012636)
[BibTex] - Cranganore, S. S., De Maio, V., Brandic, I., Do, T. M. A., & Deelman, E. (2022). Molecular Dynamics Workflow Decomposition for Hybrid Classic/Quantum Systems. 2022 IEEE 18th International Conference on e-Science (e-Science), 346–356. https://doi.org/10.1109/eScience55777.2022.00048 (Funding Acknowledgments: NSF 1664162 and 1741040)
[BibTex] - Do, T. M. A., Pottier, L., Ferreira da Silva, R., Caı́no-Lores Silvina, Taufer, M., & Deelman, E. (2022). Performance assessment of ensembles of in situ workflows under resource constraints. Concurrency and Computation: Practice and Experience. https://doi.org/10.1002/cpe.7111 (Funding Acknowledgments: NSF 1664162)
[BibTex] - Do, T. M. A., Pottier, L., Yildiz, O., Vahi, K., Krawczuk, P., Peterka, T., & Deelman, E. (2022). Accelerating Scientific Workflows on HPC Platforms with In Situ Processing. 2022 IEEE/ACM 22nd International Symposium on Cluster, Cloud and Internet Computing (CCGrid), 1–10. https://doi.org/10.1109/CCGrid54584.2022.00009 (Funding Acknowledgments: NSF 1664162, DOE DE-AC02-06CH11357, DE-AC02-05CH11231, DE-SC0012636 and DE-SC0022328)
[BibTex] - Do, T. M. A., Pottier, L., da Silva, R. F., Suter, F., Caíno-Lores, S., Taufer, M., & Deelman, E. (2022). Co-scheduling Ensembles of In Situ Workflows. 2022 IEEE/ACM Workshop on Workflows in Support of Large-Scale Science (WORKS), 43–51. https://doi.org/10.1109/WORKS56498.2022.00011 (Funding Acknowledgments: NSF 1741040, 1741057, 1841758 and DOE DE-AC05-00OR22725)
[BibTex] - Gesing, S., Deelman, E., Ferreira da Silva, R., Hildreth, M., McDowell, M. A., Meyers, N., Taylor, I., & Tain, D. (2022). VisDict: A Visual Dictionary in a Science Gateway. In Gateways 2022. Zenodo. https://doi.org/10.5281/zenodo.7098353 (Funding Acknowledgments: NSF 2216851)
[BibTex] - Hacker, T., Smith, P., Brunson, D., Arafune, L., Cheatham, T., & Deelman, E. (2022). Building the Research Innovation Workforce: Challenges and Recommendations from a Virtual Workshop to Advance the Research Computing Community*. Practice and Experience in Advanced Research Computing. https://doi.org/10.1145/3491418.3530288 (Funding Acknowledgments: NSF 2036534)
[BibTex] - Hamed, A. A., Jonczyk, J., Alam, M. Z., Deelman, E., & Lee, B. S. (2022). Mining Literature-Based Knowledge Graph for Predicting Combination Therapeutics: A COVID-19 Use Case. 2022 IEEE International Conference on Knowledge Graph (ICKG), 79–86. https://doi.org/10.1109/ICKG55886.2022.00018
[BibTex] - Honoré, V., Do, T. M. A., Pottier, L., Da Silva, R. F., Deelman, E., & Suter, F. (2022). SIM-SITU: A Framework for the Faithful Simulation of in situ Processing. 2022 IEEE 18th International Conference on e-Science (e-Science), 182–191. https://doi.org/10.1109/eScience55777.2022.00032 (Funding Acknowledgments: DOE DE-AC05-00OR22725)
[BibTex] - Jin, H., Raghavan, K., Papadimitriou, G., Wang, C., Mandal, A., Krawczuk, P., Pottier, L., Kiran, M., Deelman, E., & Balaprakash, P. (2022). Workflow Anomaly Detection with Graph Neural Networks. 2022 IEEE/ACM Workshop on Workflows in Support of Large-Scale Science (WORKS), 35–42. https://doi.org/10.1109/WORKS56498.2022.00010 (Funding Acknowledgments: DOE DE-SC0022328, DE-AC02-06CH11357)
[BibTex] - Knuth, S. L., Ma, J., Adams, J. C., Chalker, A., Deelman, E., Freeborn, L., Gazula, V., Goodhue, J., Griffioen, J., Hudak, D., Pasquale, A., Perkins, D., Romanella, A., & Rynge, M. (2022). The Multi-Tier Assistance, Training, and Computational Help (MATCH) Project, a Track 2 NSF ACCESS Initiative. The Journal of Computational Science Education, 13(2), 17–20. https://doi.org/https://doi.org/10.22369/issn.2153-4136/13/2/4 (Funding Acknowledgments: NSF 2138286)
[BibTex] - Murillo, A., Deelman, E., Nabrzyski, J., & Pottier, L. (2022). Broadening Student Participation in Cyberinfrastructure Research and Development. Practice and Experience in Advanced Research Computing. https://doi.org/10.1145/3491418.3535175 (Funding Acknowledgments: NSF 2127548 and 1842042)
[BibTex] - Murillo, A. P., Deelman, E., Nabrzyski, J., & Pottier Loı̈c. (2022). Broadening Student Participation in Cyberinfrastructure Research and Development. Practice and Experience in Advanced Research Computing. https://doi.org/10.1145/3491418.3535175 (Funding Acknowledgments: NSF 2127548, 1842042)
[BibTex] - Osinski, T., Rynge, M., Hong, J. K., Vahi, K., Chu, R., Sul, C., Deelman, E., & Kim, B.-D. (2022). An automated Cryo-EM computational environment on the HPC system using Pegasus WMS. 2022 IEEE/ACM Workshop on Workflows in Support of Large-Scale Science (WORKS), 60–67. https://doi.org/10.1109/WORKS56498.2022.00013 (Funding Acknowledgments: NSF 1664162)
[BibTex] - Patel, R., Roachell, B., Caíno-Lores, S., Ketron, R., Leonard, J., Tan, N., Vahi, K., Brown, D. A., Deelman, E., & Taufer, M. (2022). Reproducibility of the First Image of a Black Hole in the Galaxy M87 From the Event Horizon Telescope Collaboration. Computing in Science & Engineering, 24(5), 42–52. https://doi.org/10.1109/MCSE.2023.3241105 (Funding Acknowledgments: NSF 2041977, 1941443, 2041901, 1664162 and 2041878)
[BibTex] - Tanaka, R., Papadimitriou, G., Viswanath, S. C., Wang, C., Lyons, E., Thareja, K., Qu, C., Esquivel, A., Deelman, E., Mandal, A., Calyam, P., & Zink, M. (2022). Automating Edge-to-cloud Workflows for Science: Traversing the Edge-to-cloud Continuum with Pegasus. 2022 22nd IEEE International Symposium on Cluster, Cloud and Internet Computing (CCGrid), 826–833. https://doi.org/10.1109/CCGrid54584.2022.00098 (Funding Acknowledgments: NSF 2018074, 1664162. Best Paper Award.)
[BibTex] - Xin, Y., Fu, S.-W., Mandal, A., Tanaka, R., Rynge, M., Vahi, K., & Deelman, E. (2022). Data Integrity Error Localization in Networked Systems with Missing Data. ICC 2022 - IEEE International Conference on Communications, 341–346. https://doi.org/10.1109/ICC45855.2022.9838996 (Funding Acknowledgments: NSF 1839900)
[BibTex]
2021
- Brown, D., Vahi, K., Taufer, M., Welch, V., & Deelman, E. (2021). Reproducing GW150914: the first observation of gravitational waves from a binary black hole merger. Computing in Science & Engineering. https://doi.org/10.1109/MCSE.2021.3059232 (Funding Acknowledgments: NSF 1664162, NSF 1823405)
[BibTex] - Burkat, K., Pawlik, M., Balis, B., Malawski, M., Vahi, K., Rynge, M., da Silva, R. F., & Deelman, E. (2021). Serverless Containers – Rising Viable Approach to Scientific Workflows. 2021 IEEE 17th International Conference on EScience (EScience), 40–49. https://doi.org/10.1109/eScience51609.2021.00014
[BibTex] - Casanova, H., Deelman, E., Gesing, S., Hildreth, M., Hudson, S., Koch, W., Larson, J., McDowell, M. A., Meyers, N., Navarro, J.-L., Papadimitriou, G., Tanaka, R., Taylor, I., Thain, D., Wild, S. M., Filgueira, R., & da Silva, R. F. (2021). Emerging Frameworks for Advancing Scientific Workflows Research, Development, and Education. 2021 IEEE Workshop on Workflows in Support of Large-Scale Science (WORKS), 74–80. https://doi.org/10.1109/WORKS54523.2021.00015 (Funding Acknowledgments: DOE DE-SC0012636, NSF 1664162)
[BibTex] - Casanova, H., Tanaka, R., Koch, W., & Ferreira da Silva, R. (2021). Teaching Parallel and Distributed Computing Concepts in Simulation with WRENCH. Journal of Parallel and Distributed Computing. https://doi.org/10.1016/j.jpdc.2021.05.009 (Funding Acknowledgments: NSF 1923539, NSF 1642335)
[BibTex] - Coleman, T., Casanova, H., & Ferreira da Silva, R. (2021). WfChef: Automated Generation of Accurate Scientific Workflow Generators. 17th IEEE EScience Conference. (Funding Acknowledgments: NSF 1923539, NSF 2016619)
[BibTex] - Coleman, T., Casanova, H., Gwartney, T., & Ferreira da Silva, R. (2021). Evaluating energy-aware scheduling algorithms for I/O-intensive scientific workflows. International Conference on Computational Science (ICCS), 183–197. https://doi.org/10.1007/978-3-030-77961-0_16 (Funding Acknowledgments: NSF 1923539, NSF 2016619)
[BibTex] - Deelman, E., Ferreira da Silva, R., Vahi, K., Rynge, M., Mayani, R., Tanaka, R., Whitcup, W., & Livny, M. (2021). The Pegasus Workflow Management System: Translational Computer Science in Practice. Journal of Computational Science, 52, 101200. https://doi.org/10.1016/j.jocs.2020.101200 (Funding Acknowledgments: NSF 1664162)
[BibTex] - Deelman, E., Mandal, A., Murillo, A. P., Nabrzyski, J., Pascucci, V., Ricci, R., Baldin, I., Sons, S., Christopherson, L., Vardeman, C., Ferreira da Silva, R., Wyngaard, J., Petruzza, S., Rynge, M., Vahi, K., Whitcup, W. R., Drake, J., & Scott, E. (2021). Blueprint: Cyberinfrastructure Center of Excellence. Zenodo. https://doi.org/10.5281/zenodo.4587866
[BibTex] - Do, H.-D., Hayot-Sasson, V., Ferreira da Silva, R., Steele, C., Casanova, H., & Glatard, T. (2021). Modeling the Linux page cache for accurate simulation of data-intensive applications. IEEE Cluster. (Funding Acknowledgments: NSF 1923539)
[BibTex] - Do, T. M. A., Pottier, L., Caíno-Lores, S., Ferreira da Silva, R., Cuendet, M. A., Weinstein, H., Estrada, T., Taufer, M., & Deelman, E. (2021). A Lightweight Method for Evaluating In Situ Workflow Efficiency. Journal of Computational Science, 48, 101259. https://doi.org/10.1016/j.jocs.2020.101259 (Funding Acknowledgments: NSF 1741040, DOE DE-SC0012636)
[BibTex] - Do, T. M. A., Pottier Loı̈c, Ferreira da Silva, R., Caı́no-Lores Silvina, Taufer, M., & Deelman, E. (2021). Assessing Resource Provisioning and Allocation of Ensembles of In Situ Workflows. 50th International Conference on Parallel Processing Workshop. https://doi.org/10.1145/3458744.3474051 (Funding Acknowledgments: NSF 1741040, DOE SC0012636)
[BibTex] - Ferreira da Silva, R., Casanova, H., Chard, K., Altintas, I., Badia, R. M., Balis, B., Coleman, T., Coppens, F., Di Natale, F., Enders, B., Fahringer, T., Filgueira, R., Fursin, G., Garijo, D., Goble, C., Howell, D., Jha, S., Katz, D. S., Laney, D., … Wolf, M. (2021). A Community Roadmap for Scientific Workflows Research and Development. 2021 IEEE Workshop on Workflows in Support of Large-Scale Science (WORKS), 81–90. https://doi.org/10.1109/WORKS54523.2021.00016
[BibTex] - Ferreira da Silva, R., Casanova, H., Chard, K., Coleman, T., Laney, D., Ahn, D., Jha, S., Howell, D., Soiland-Reys, S., Altintas, I., Thain, D., Filgueira, R., Babuji, Y., Badia, R. M., Balis, B., Caino-Lores, S., Callaghan, S., Coppens, F., Crusoe, M. R., … Wozniak, J. (2021). Workflows Community Summit: Advancing the State-of-the-art of Scientific Workflows Management Systems Research and Development. Zenodo. https://doi.org/10.5281/zenodo.4915801
[BibTex] - Ferreira da Silva, R., Casanova, H., Chard, K., Laney, D., Ahn, D., Jha, S., Goble, C., Ramakrishnan, L., eerson, L., Enders, B., Thain, D., Altintas, I., Babuji, Y., Badia, R., Bonazzi, V., Coleman, T., Crusoe, M., Deelman, E., Di Natale, F., … Wozniak, J. (2021). Workflows Community Summit: Bringing the Scientific Workflows Community Together. Zenodo. https://doi.org/10.5281/zenodo.4606958
[BibTex] - Gesing, S., Ferreira da Silva, R., Deelman, E., Hildreth, M., McDowell, M. A., Meyers, N., Taylor, I., & Tain, D. (2021). VisDict: Enhancing the Communication between Workflow Providers and User Communities via a Visual Dictionary. 2021 IEEE/ACM Workflows in Support of Large-Scale Science (WORKS).
[BibTex] - Gil, Y., Garijo, D., Khider, D., Knoblock, C. A., Ratnakar, V., Osorio, M., Vargas, H., Pham, M., Pujara, J., Shbita, B., Vu, B., Chiang, Y.-Y., Feldman, D., Lin, Y., Song, H., Kumar, V., Khandelwal, A., Steinbach, M., Tayal, K., … Shu, L. (2021). Artificial Intelligence for Modeling Complex Systems: Taming the Complexity of Expert Models to Improve Decision Making. ACM Transactions on Interactive Intelligent Systems, 11(2). (Funding Acknowledgments: DARPA W911NF-18-1-0027)
[BibTex] - Hataishi, E., Dutot, P.-F., Ferreira da Silva, R., & Casanova, H. (2021). GLUME: A Strategy for Reducing Workflow Execution Times on Batch-Scheduled Platforms. Workshop on Job Scheduling Strategies for Parallel Processing (JSSPP). (Funding Acknowledgments: NSF 1923539)
[BibTex] - Hayes, C., Kulkarni, C., Milman, E. D., Okunloye, O., Olshansky, A., Oruche, R., Kee, K., Moreira, P. C. S., Vardeman, C., Coleman, T., Do, T. M. A., Jain, A., Krawczuk, P., Lam, K., Nagarkar, S., Papadimitriou, G., Subramanya, S., White, R., Whitcup, W., … Deelman, E. (2021). 2021 SciTech and Friends Research Symposium. Zenodo. https://doi.org/10.5281/zenodo.4847543
[BibTex] - Ketron, R., Leonard, J., Roachell, B., Patel, R., White, R., Caíno-Lores, S., Tan, N., Miles, P., Vahi, K., Deelman, E., Brown, D., & Taufer, M. (2021). A Case Study in Scientific Reproducibility from the Event Horizon Telescope (EHT). 2021 IEEE 17th International Conference on EScience (EScience), 249–250. https://doi.org/10.1109/eScience51609.2021.00045 (Funding Acknowledgments: NSF 2041977, 2041901, 2041878)
[BibTex] - Krawczuk, P., Nagarkar, S., & Deelman, E. (2021). CrisisFlow: Multimodal Representation Learning Workflow for Crisis Computing. 2021 IEEE 17th International Conference on EScience (EScience), 264–266. https://doi.org/10.1109/eScience51609.2021.00052 (Funding Acknowledgments: NSF 1664162)
[BibTex] - Krawczuk, P., Papadimitriou, G., Nagarkar, S., Kiran, M., Mandal, A., & Deelman, E. (2021). Anomaly Detection in Scientific Workflows using End-to-End Execution Gantt Charts and Convolutional Neural Networks. Practice and Experience in Advanced Research Computing. https://doi.org/10.1145/3437359.3465597 (Funding Acknowledgments: DOE DESC0012636)
[BibTex] - Krawczuk, P., Papadimitriou, G., Tanaka, R., Do, T. M. A., Subramany, S., Nagarkar, S., Jain, A., Lam, K., Mandal, A., Pottier, L., & Deelman, E. (2021). A Performance Characterization of Scientific Machine Learning Workflows. 2021 IEEE/ACM Workflows in Support of Large-Scale Science (WORKS), 58–65. https://doi.org/10.1109/WORKS54523.2021.00013 (Funding Acknowledgments: DOE DE-SC0012636, DE-SC0022328, NSF 1664162)
[BibTex] - Lyons, E., Saplakoglu, H., Zink, M., Thareja, K., Mandal, A., Qu, C., Wang, S., Calyam, P., Papadimitriou, G., Tanaka, R., & Deelman, E. (2021). FlyNet: A Platform to Support Scientific Workflows from the Edge to the Core for UAV Applications. Proceedings of the 14th IEEE/ACM International Conference on Utility and Cloud Computing. https://doi.org/10.1145/3468737.3494098 (Funding Acknowledgments: NSF 2018074)
[BibTex] - Lyons, E., Seo, D.-J., Kim, S., Habibi, H., Papadimitriou, G., Tanaka, R., Deelman, E., Zink, M., & Mandal, A. (2021). Predicting Flash Floods in the Dallas-Fort Worth Metroplex Using Workflows and Cloud Computing. 2021 IEEE 17th International Conference on EScience (EScience), 259–261. https://doi.org/10.1109/eScience51609.2021.00050 (Funding Acknowledgments: NSF 1826997, 2018074, 1664162)
[BibTex] - Papadimitriou, G., & Deelman, E. (2021). A Lightweight GPU Monitoring Extension for Pegasus Kickstart. 2021 IEEE/ACM Workflows in Support of Large-Scale Science (WORKS). https://doi.org/10.5281/zenodo.5915106 (Funding Acknowledgments: DOE DE-SC0012636, NSF 1664162)
[BibTex] - Papadimitriou, G., Lyons, E., Wang, C., Thareja, K., Tanaka, R., Ruth, P., Rodero, I., Deelman, E., Zink, M., & Mandal, A. (2021). Fair sharing of network resources among workflow ensembles. Cluster Computing. https://doi.org/10.1007/s10586-021-03457-3 (Funding Acknowledgments: NSF 1826997)
[BibTex] - Papadimitriou, G., Wang, C., Vahi, K., Ferreira da Silva, R., Mandal, A., Zhengchun, L., Mayani, R., Rynge, M., Kiran, M., Lynch, V. E., Kettimuthu, R., Deelman, E., Vetter, J. S., & Foster, I. (2021). End-to-End Online Performance Data Capture and Analysis for Scientific Workflows. Future Generation Computer Systems, 117, 387–400. https://doi.org/10.1016/j.future.2020.11.024 (Funding Acknowledgments: DOE DE-SC0012636. Best Paper Award and Editor’s Choice Article)
[BibTex] - Rangan, R., Watkins, A. M., Chacon, J., Kretsch, R., Kladwang, W., Zheludev, I. N., Townley, J., Rynge, M., Thain, G., & Das, R. (2021). De novo 3D models of SARS-CoV-2 RNA elements from consensus experimental secondary structures. Nucleic Acids Research, 49(6), 3092–3108. https://doi.org/10.1093/nar/gkab119
[BibTex] - Taufer, M., Deelman, E., Silva, R. F. da, Estrada, T., Hall, M., & Livny, M. (2021). A Roadmap to Robust Science for High-throughput Applications: The Developers’ Perspective. 2021 IEEE International Conference on Cluster Computing (CLUSTER), 807–808. https://doi.org/10.1109/Cluster48925.2021.00068 (Funding Acknowledgments: NSF 2028881, 2028923, 2028930, 2028955, 2028956)
[BibTex] - Taufer, M., Deelman, E., da Silva, R. F., Estrada, T., & Hall, M. (2021). A Roadmap to Robust Science for High-throughput Applications: The Scientists’ Perspective. 2021 IEEE 17th International Conference on EScience (EScience), 247–248. https://doi.org/10.1109/eScience51609.2021.00044 (Funding Acknowledgments: NSF 2028881, 2028923, 2028930, 2028955, 2028956)
[BibTex] - Tu, H., Papadimitriou, G., Kiran, M., Wang, C., Mandal, A., Deelman, E., & Menzies, T. (2021). Mining Workflows for Anomalous Data Transfers. 2021 2021 IEEE/ACM 18th International Conference on Mining Software Repositories (MSR) (MSR), 1–12. https://doi.org/10.1109/MSR52588.2021.00013 (Funding Acknowledgments: NSF 1826574, NSF 1931425, DOE DE-SC0012636)
[BibTex] - Xin, Y., Fu, S.-W., Mandal, A., Baldin, I., Tanaka, R., Rynge, M., Vahi, K., Deelman, E., Abhinit, I., & Von, W. (2021). Root Cause Analysis of Data Integrity Errors in Networked Systems with Incomplete Information. 2021 International Conference on Information and Communication Technology Convergence (ICTC), 735–740. https://doi.org/10.1109/ICTC52510.2021.9621124
[BibTex]
2020
- Adams, J. C., Back, G., Bala, P., Bane, M. K., Cameron, K., Casanova, H., Ellis, M., Ferreira da Silva, R., Jethwani, G., Koch, W., Lee, T., & Zhu, T. (2020). Lightning Talks of EduHPC 2020. 2020 IEEE/ACM Workshop on Education for High-Performance Computing (EduHPC), 59–64. https://doi.org/10.1109/EduHPC51895.2020.00013 (Funding Acknowledgments: NSF 1923539)
[BibTex] - Casanova, H., Ferreira da Silva, R., Gonzalez-Escribano, A., Koch, W., Torres, Y., & Bunde, D. P. (2020). Peachy Parallel Assignments (EduHPC 2020). 2020 IEEE/ACM Workshop on Education for High-Performance Computing (EduHPC), 53–58. https://doi.org/10.1109/EduHPC51895.2020.00012 (Funding Acknowledgments: NSF 1923539)
[BibTex] - Casanova, H., Ferreira da Silva, R., Tanaka, R., Pandey, S., Jethwani, G., Koch, W., Albrecht, S., Oeth, J., & Suter, F. (2020). Developing Accurate and Scalable Simulators of Production Workflow Management Systems with WRENCH. Future Generation Computer Systems, 112, 162–175. https://doi.org/10.1016/j.future.2020.05.030 (Funding Acknowledgments: NSF 1642335, NSF 1923539)
[BibTex] - Do, T. M. A., Pottier, L., Thomas, S., Ferreira da Silva, R., Cuendet, M. A., Weinstein, H., Estrada, T., Taufer, M., & Deelman, E. (2020). A Novel Metric to Evaluate In Situ Workflows. International Conference on Computational Science (ICCS), 538–553. https://doi.org/10.1007/978-3-030-50371-0_40 (Funding Acknowledgments: NSF 1741040)
[BibTex] - Ferreira da Silva, R., Casanova, H., Orgerie, A.-C., Tanaka, R., Deelman, E., & Suter, F. (2020). Characterizing, Modeling, and Accurately Simulating Power and Energy Consumption of I/O-intensive Scientific Workflows. Journal of Computational Science, 44, 101157. https://doi.org/10.1016/j.jocs.2020.101157 (Funding Acknowledgments: NSF 1642335, NSF 1923539, NSF 1664162, DOE DE-SC0012636)
[BibTex] - Ferreira da Silva, R., Pottier, L., Coleman, T., Deelman, E., & Casanova, H. (2020). WorkflowHub: Community Framework for Enabling Scientific Workflow Research and Development. 2020 IEEE/ACM Workflows in Support of Large-Scale Science (WORKS), 49–56. https://doi.org/10.1109/WORKS51914.2020.00012 (Funding Acknowledgments: NSF 2016619, DOE DE-SC0012636, NSF 1664162, NSF 1923539)
[BibTex] - Kiran, M., Wang, C., Papadimitriou, G., Mandal, A., & Deelman, E. (2020). Detecting Anomalous Packets in Network Transfers: Investigations using PCA, Autoencoder and Isolation Forest in TCP. Machine Learning. https://doi.org/10.1007/s10994-020-05870-y (Funding Acknowledgments: DOE DESC0012636)
[BibTex] - Lyons, E., Westbrook, D., Grote, A., Papadimitriou, G., Thareja, K., Wang, C., Zink, M., Deelman, E., Mandal, A., & Ruth, P. (2020). An On-Demand Weather Avoidance System for Small Aircraft Flight Path Routing. In F. Darema, E. Blasch, S. Ravela, & A. Aved (Eds.), Dynamic Data Driven Application Systems (pp. 311–319). Springer International Publishing. https://doi.org/10.1007/978-3-030-61725-7_36 (Funding Acknowledgments: NSF 1826997, 2018074)
[BibTex] - Lyons, E., Zink, M., Mandal, A., Wang, C., Ruth, P., Radhakrishnan, C., Papadimitriou, G., Deelman, E., Thareja, K., & Rodero, I. (2020). DyNamo: Scalable Weather Workflow Processing in the Academic MultiCloud. 100th American Meteorological Society Annual Meeting. (Funding Acknowledgments: NSF 1826997)
[BibTex] - Papadimitriou, G., Lyons, E., Wang, C., Thareja, K., Tanaka, R., Ruth, P., Villalobos, J. J., Rodero, I., Deelman, E., Zink, M., & Mandal, A. (2020). Application Aware Software Defined Flows of Workflow Ensembles. 2020 IEEE/ACM Innovating the Network for Data-Intensive Science (INDIS), 10–21. https://doi.org/10.1109/INDIS51933.2020.00007 (Funding Acknowledgments: NSF 1826997)
[BibTex] - Papadimitriou, G., Vahi, K., Kincl, J., Anantharaj, V., Deelman, E., & Wells, J. (2020). Workflow Submit Nodes as a Service on Leadership Class Systems. Proceedings of the Practice and Experience in Advanced Research Computing. https://doi.org/10.1145/3311790.3396671 (Funding Acknowledgments: DOE DESC0012636. Best Student Paper Award in Advanced Research Computing Environments – Systems and System Software Track.)
[BibTex] - Pottier, L., Ferreira da Silva, R., Casanova, H., & Deelman, E. (2020). Modeling the Performance of Scientific Workflow Executions on HPC Platforms with Burst Buffers. 2020 IEEE International Conference on Cluster Computing (CLUSTER), 92–103. https://doi.org/10.1109/CLUSTER49012.2020.00019 (Funding Acknowledgments: DOE DE-SC0012636, NSF 1664162, NSF 1741040, NSF 1923539, NSF 1923621)
[BibTex] - Versluis, L., Mathá, R., Talluri, S., Hegeman, T., Prodan, R., Deelman, E., & Iosup, A. (2020). The Workflow Trace Archive: Open-Access Data from Public and Private Computing Infrastructures. IEEE Transactions on Parallel and Distributed Systems, 31(9), 2170–2184. https://doi.org/10.1109/TPDS.2020.2984821 (Funding Acknowledgments: NSF 1664162)
[BibTex] - Wang, C., Papadimitriou, G., Kiran, M., Mandal, A., & Deelman, E. (2020). Identifying Execution Anomalies for Data Intensive Workflows Using Lightweight ML Techniques. 2020 IEEE High Performance Extreme Computing Conference (HPEC), 1–7. https://doi.org/10.1109/HPEC43674.2020.9286139 (Funding Acknowledgments: DOE DESC0012636)
[BibTex] - Vahi, K., Goldstein, D., Papadimitriou, G., Nugent, P., & Deelman, E. (2020). Gearing the DECam Analysis Pipeline for Multi-Messenger Astronomy Using Pegasus Workflows. In R. Pizzo, E. R. Deul, J. D. Mol, J. de Plaa, & H. Verkouter (Eds.), Astronomical Data Analysis Software and Systems XXIX (Vol. 527, p. 631). (Funding Acknowledgments: NSF 1664162, DOE DESC0012636)
[BibTex]
2019
- Bogol, S., Brenner, P., Brinckman, A., Deelman, E., Ferreira da Silva, R., Gupta, S., Nabrzyski, J., Park, S., Perez, D., Rynge, M., Taylor, I., Vahi, K., Werf, M. V., Sarah, R., & Wyngaard, S. (2019). A Secure Gateway for Enabling ASIC Design Collaborations. 11th International Workshop on Science Gateways (IWSG 2019). (Funding Acknowledgments: DARPA HR0011-16-C-0043)
[BibTex] - Brinckman, A., Deelman, E., Gupta, S., Nabrzyski, J., Park, S., Ferreira da Silva, R., Taylor, I. J., & Vahi, K. (2019). Collaborative Circuit Designs using the CRAFT Repository. Future Generation Computer Systems, 94, 841–853. https://doi.org/10.1016/j.future.2018.01.018 (Funding Acknowledgments: DARPA HR0011-16-C-0043)
[BibTex] - Chang, P., Allen, G., Anderson, W., Bianco, F. B., Bloom, J. S., Brady, P. R., Brazier, A., Cenko, S. B., Couch, S. M., DeYoung, T., Deelman, E., Etienne, Z. B., Foley, R. J., Fox, D. B., Golkhou, V. Z., Grant, D. R., Hanna, C., Holley-Bockelmann, K., Howell, D. A., … Zhang, Z. (2019). Cyberinfrastructure Requirements to Enhance Multi-messenger Astrophysics. https://arxiv.org/abs/1903.04590
[BibTex] - Chapp, D., Rorabaugh, D., Brown, D. A., Deelman, E., Vahi, K., Welch, V., & Taufer, M. (2019). Applicability Study of the PRIMAD Model to LIGO Gravitational Wave Search Workflows. Proceedings of the 2nd International Workshop on Practical Reproducible Evaluation of Computer Systems (P-RECS’19), 1–6. https://doi.org/10.1145/3322790.3330591
[BibTex] - Deelman, E., Mandal, A., Jiang, M., & Sakellariou, R. (2019). The role of machine learning in scientific workflows. The International Journal of High Performance Computing Applications. https://doi.org/10.1177/1094342019852127 (Funding Acknowledgments: LLNL-ABS-755833 DE-AC52-07NA27344, DOE DESC0012636, NSF 1839900, LLNL-JRNL-765200)
[BibTex] - Deelman, E., Mandal, A., Pascucci, V., Sons, S., Wyngaard, J., Vardeman II, C. F., Petruzza, S., Baldin, I., Christopherson, L., Mitchell, R., Pottier, L., Rynge, M., Scott, E., Vahi, K., Kogank, M., Mann, J. A., Gulbransen, T., Allen, D., Barlow, D., … Stone, S. (2019). Cyberinfrastructure Center of Excellence Pilot: Connecting Large Facilities Cyberinfrastructure. 15th International Conference on EScience (EScience). (Funding Acknowledgments: NSF 1842042)
[BibTex] - Deelman, E., Vahi, K., Rynge, M., Mayani, R., Ferreira da Silva, R., Papadimitriou, G., & Livny, M. (2019). The Evolution of the Pegasus Workflow Management Software. Computing in Science Engineering, 21(4), 22–36. https://doi.org/10.1109/MCSE.2019.2919690 (Funding Acknowledgments: NSF 1664162, NSF 1148515, DOE DESC0012636, NSF 1642053)
[BibTex] - Edwards, R., Abeysinghe, E., Pierce, M., & Rynge, M. (2019). Search SRA Gateway for Metagenomics Data. Gateways 2019.
[BibTex] - Ferreira da Silva, R., Callaghan, S., Do, T. M. A., Papadimitriou, G., & Deelman, E. (2019). Measuring the Impact of Burst Buffers on Data-Intensive Scientific Workflows. Future Generation Computer Systems, 101, 208–220. https://doi.org/10.1016/j.future.2019.06.016 (Funding Acknowledgments: DOE DESC0012636, NSF 1664162, NSF 1741040)
[BibTex] - Ferreira da Silva, R., Casanova, H., Tanaka, R., & Suter, F. (2019). Bridging Concepts and Practice in eScience via Simulation-driven Engineering. Workshop on Bridging from Concepts to Data and Computation for EScience (BC2DC’19), 15th International Conference on EScience (EScience), 609–614. https://doi.org/10.1109/eScience.2019.00084 (Funding Acknowledgments: NSF 1642335, NSF 1923539)
[BibTex] - Ferreira da Silva, R., Filgueira, R., Deelman, E., Pairo-Castineira, E., Overton, I. M., & Atkinson, M. (2019). Using Simple PID-inspired Controllers for Online Resilient Resource Management of Distributed Scientific Workflows. Future Generation Computer Systems, 95, 615–628. https://doi.org/10.1016/j.future.2019.01.015 (Funding Acknowledgments: DOE DE-SC0012636)
[BibTex] - Ferreira da Silva, R., Mayani, R., Shi, Y., Kemanian, A. R., Rynge, M., & Deelman, E. (2019). Empowering Agroecosystem Modeling with HTC Scientific Workflows: The Cycles Model Use Case. First International Workshop on Big Data Tools, Methods, and Use Cases for Innovative Scientific Discovery (BTSD), 4545–4552. https://doi.org/10.1109/BigData47090.2019.9006107 (Funding Acknowledgments: DARPA W911NF-18-1-0027, NSF 1664162)
[BibTex] - Ferreira da Silva, R., Orgerie, A.-C., Casanova, H., Tanaka, R., Deelman, E., & Suter, F. (2019). Accurately Simulating Energy Consumption of I/O-intensive Scientific Workflows. Computational Science – ICCS 2019, 138–152. https://doi.org/10.1007/978-3-030-22734-0_11 (Funding Acknowledgments: NSF 1642335, NSF 1664162, DOE DE-SC0012636)
[BibTex] - Garijo, D., Khider, D., Ratnakar, V., Gil, Y., Deelman, E., Ferreira da Silva, R., Knoblock, C., Chiang, Y.-Y., Pham, M., Pujara, J., Vu, B., Feldman, D., Mayani, R., Cobourn, K., Duffy, C., Kemanian, A., Shu, L., Kumar, V., Khandelwal, A., … Pierce, S. (2019). An Intelligent Interface for Integrating Climate, Hydrology, Agriculture, and Socioeconomic Models. ACM 24th International Conference on Intelligent User Interfaces (IUI’19), 111–112. https://doi.org/10.1145/3308557.3308711 (Funding Acknowledgments: DARPA W911NF-18-1-0027)
[BibTex] - Lyons, E., Papadimitriou, G., Wang, C., Thareja, K., Ruth, P., Villalobos, J. J., Rodero, I., Deelman, E., Zink, M., & Mandal, A. (2019). Toward a Dynamic Network-centric Distributed Cloud Platform for Scientific Workflows: A Case Study for Adaptive Weather Sensing. 15th International Conference on EScience (EScience), 67–76. https://doi.org/10.1109/eScience.2019.00015 (Funding Acknowledgments: NSF 1826997)
[BibTex] - Mitchell, R., Pottier, L., Jacobs, S., Ferreira da Silva, R., Rynge, M., Vahi, K., & Deelman, E. (2019). Exploration of Workflow Management Systems Emerging Features from Users Perspectives. First International Workshop on Big Data Tools, Methods, and Use Cases for Innovative Scientific Discovery (BTSD), 4537–4544. https://doi.org/10.1109/BigData47090.2019.9005494 (Funding Acknowledgments: NSF 1842042)
[BibTex] - Papadimitriou, G., Kiran, M., Wang, C., Mandal, A., & Deelman, E. (2019). Training Classifiers to Identify TCP Signatures in Scientific Workflows. 2019 IEEE/ACM Innovating the Network for Data-Intensive Science (INDIS), 61–68. https://doi.org/10.1109/INDIS49552.2019.00012 (Funding Acknowledgments: DOE DESC0012636)
[BibTex] - Pendergrass, S. A., Buyske, S., Jeff, J. M., Frase, A., Dudek, S., Bradford, Y., Ambite, J. L., Avery, C. L., Buzkova, P., Deelman, E., Fesinmeyer, M. D., Haiman, C., Heiss, G., Hindorff, L. A., Hsu, C. N., Jackson, R. D., Lin, Y., Le Marchand, L., Matise, T. C., … Crawford, D. C. (2019). A phenome-wide association study (PheWAS) in the Population Architecture using Genomics and Epidemiology (PAGE) study reveals potential pleiotropy in African Americans. PLoS ONE, 14(12), e0226771. (Funding Acknowledgments: NIH U01HG004801 (Coordinating Center))
[BibTex] - Pendergrass, S. A., Buyske, S., Jeff, J. M., Frase, A., Dudek, S., Bradford, Y., Ambite, J.-L., Avery, C. L., Buzkova, P., Deelman, E., & others. (2019). A phenome-wide association study (PheWAS) in the Population Architecture using Genomics and Epidemiology (PAGE) study reveals potential pleiotropy in African Americans. PloS One, 14(12). https://doi.org/10.1371/journal.pone.0226771
[BibTex] - Rodero, I., Qin, Y., Valls, J., Simonet, A., Villalobos, J. J., Parashar, M., Youn, C., Wang, C., Thareja, K., Ruth, P., Papadimitriou, G., Lyons, E., & Zink, M. (2019). Enabling Data Streaming-based Science Gateway through Federated Cyberinfrastructure. Gateways 2019. (Funding Acknowledgments: NSF 1835692, NSF 1745246, NSF 1826997)
[BibTex] - Rynge, M., Vahi, K., Deelman, E., Mandal, A., Baldin, I., Bhide, O., Heiland, R., Welch, V., Hill, R., Poehlman, W. L., & Feltus, F. A. (2019). Integrity Protection for Scientific Workflow Data: Motivation and Initial Experiences. Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (Learning), 17:1–17:8. https://doi.org/10.1145/3332186.3332222 (Funding Acknowledgments: NSF 1642070, NSF 1642053, NSF 1642090. Best Paper in Advanced Research Computing Software and Applications Track. The Phil Andrews Most Transformative Contribution Award.)
[BibTex] - Tanaka, R., Casanova, H., & Ferreira da Silva, R. (2019). Teaching Parallel and Distributed Computing Concepts in Simulation with WRENCH. Workshop on Education for High-Performance Computing (EduHPC), 1–9. https://doi.org/10.1109/EduHPC49559.2019.00006 (Funding Acknowledgments: NSF 1642335, NSF 1923539)
[BibTex] - Thomas, S., Wyatt, M., Do, T. M. A., Pottier, L., Ferreira da Silva, R., Weinstein, H., Cuendet, M. A., Estrada, T., Deelman, E., & Taufer, M. (2019). Characterization of In Situ and In Transit Analytics of Molecular Dynamics Simulations for Next-generation Supercomputers. 15th International Conference on EScience (EScience), 188–198. https://doi.org/10.1109/eScience.2019.00027 (Funding Acknowledgments: NSF 1741040)
[BibTex] - Vahi, K., Rynge, M., Papadimitriou, G., Brown, D., Mayani, R., Ferreira da Silva, R., Deelman, E., Mandal, A., Lyons, E., & Zink, M. (2019). Custom Execution Environments with Containers in Pegasus-enabled Scientific Workflows. 15th International Conference on EScience (EScience), 281–290. https://doi.org/10.1109/eScience.2019.00039 (Funding Acknowledgments: NSF 1664162, NSF 1826997, NSF 1443047)
[BibTex] - Vahi, K., Wang, M. H., Chang, C., Dodelson, S., Rynge, M., & Deelman, E. (2019). Workflows using Pegasus: Enabling Dark Energy Survey Pipelines. Astronomical Data Analysis Software and Systems XXVIII, 523, 689–692. (Funding Acknowledgments: NSF 1664162)
[BibTex] - Weitzel, D., Zvada, M., Vukotic, I., Gardner, R. W., Bockelman, B., Rynge, M., Hernandez, E. F., Lin, B., & Selmeci, M. (2019). StashCache: A Distributed Caching Federation for the Open Science Grid. CoRR, abs/1905.06911. http://arxiv.org/abs/1905.06911
[BibTex] - Wojcik, G. L., Graff, M., Nishimura, K. K., Tao, R., Haessler, J., Gignoux, C. R., Highland, H. M., Patel, Y. M., Sorokin, E. P., Avery, C. L., Belbin, G. M., Bien, S. A., Cheng, I., Cullina, S., Hodonsky, C. J., Hu, Y., Huckins, L. M., Jeff, J., Justice, A. E., … Carlson, C. S. (2019). Genetic analyses of diverse populations improves discovery for complex traits. Nature, 570, 514–518. https://doi.org/10.1038/s41586-019-1310-4
[BibTex]
2018
- Bhide, O., Hill, R., Vahi, K., Rynge, M., & Velch, V. (2018). Combating Workflow Failures with Integrity-based Checkpoints and Blockchain. 6th International Workshop on Distributed Storage and Blockchain Technologies for Big Data. (Funding Acknowledgments: NSF 1642070, 1642053, and 1642090)
[BibTex] - Casanova, H., Pandey, S., Oeth, J., Tanaka, R., Suter, F., & Ferreira da Silva, R. (2018). WRENCH: A Framework for Simulating Workflow Management Systems. 13th Workshop on Workflows in Support of Large-Scale Science (WORKS’18), 74–85. https://doi.org/10.1109/WORKS.2018.00013 (Funding Acknowledgments: NSF 1642335)
[BibTex] - Deelman, E., Peterka, T., Altintas, I., Carothers, C. D., van Dam, K. K., Moreland, K., Parashar, M., Ramakrishnan, L., Taufer, M., & Vetter, J. (2018). The future of scientific workflows. The International Journal of High Performance Computing Applications, 32(1), 159–175. https://doi.org/10.1177/1094342017704893
[BibTex] - Do, T. M. A., Jiang, M., Gallagher, B., Chu, A., Harrison, C., Vahi, K., & Deelman, E. (2018). Enabling Data Analytics Workflows using Node-Local Storage. The International Conference for High Performance Computing, Networking, Storage, and Analysis (SC18), Poster. (Funding Acknowledgments: LLNL-ABS-755833 DE-AC52-07NA27344, NSF 1741040)
[BibTex] - Estrada, T., Benson, J., Carrillo-Cabada, H., Razavi, A., Cuendet, M., Weinstein, H., Deelman, E., & Taufer, M. (2018). Graphic Encoding of Macromolecules for Efficient High-Throughput Analysis. 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics, 315–324. https://doi.org/10.1145/3233547.3233607 (Funding Acknowledgments: NSF 1741040)
[BibTex] - Ferreira da Silva, R., Garijo, D., Peckham, S., Gil, Y., Deelman, E., & Ratnakar, V. (2018). Towards Model Integration via Abductive Workflow Composition and Multi-Method Scalable Model Execution. 9th International Congress on Environmental Modelling and Software. (Funding Acknowledgments: DARPA W911NF-18-1-0027)
[BibTex] - Filgueira, R., Ferreira da Silva, R., Deelman, E., Christodoulou, V., & Krause, A. (2018). IoT-Hub: New IoT data-platform for Virtual Research Environments. 10th International Workshop on Science Gateways (IWSG 2018). (Funding Acknowledgments: DOE DE-SC0012636)
[BibTex] - Gil, Y., Cobourn, K., Deelman, E., Duffy, C., Ferreira da Silva, R., Kemanian, A., Knoblock, C., Kumar, V., Peckham, S., Carvalho, L., Chiang, Y.-Y., Garijo, D., Khider, D., Khandelwal, A., Pahm, M., Pujara, J., Ratnakar, V., Stoica, M., & Vu, B. (2018). MINT: Model Integration Through Knowledge-Powered Data and Process Composition. 9th International Congress on Environmental Modelling and Software. (Funding Acknowledgments: DARPA W911NF-18-1-0027)
[BibTex] - Jordan, T. H., Callaghan, S., Graves, R. W., Wang, F., Milner, K. R., Goulet, C. A., Maechling, P. J., Olsen, K. B., Cui, Y., Juve, G., Vahi, K., Yu, J., Deelman, E., & Gill, D. (2018). CyberShake Models of Seismic Hazards in Southern and Central California. Seismological Research Letters, 89(2B), 875–876.
[BibTex] - Jordan, T. H., Callaghan, S., Graves, R. W., Wang, F., Milner, K. R., Goulet, C. A., Maechling, P. J., Olsen, K. B., Cui, Y., Juve, G., Vahi, K., Yu, J., Deelman, E., & Gill, D. (2018). CyberShake Models of Seismic Hazards in Southern and Central California. 11th National Conference in Earthquake Engineering.
[BibTex] - Levi, K., Rynge, M., Abeysinghe, E., & Edwards, R. A. (2018). Searching the Sequence Read Archive Using Jetstream and Wrangler. Proceedings of the Practice and Experience on Advanced Research Computing, 50:1–50:7. https://doi.org/10.1145/3219104.3229278
[BibTex] - Pandey, S., Vahi, K., Ferreira da Silva, R., Deelman, E., Jian, M., Harrison, C., Chu, A., & Casanova, H. (2018). Event-Based Triggering and Management of Scientific Workflow Ensembles. http://sighpc.ipsj.or.jp/HPCAsia2018/poster/post102s2-file1.pdf (Poster presented at the HPC Asia 2018: Tokyo, Japan)
[BibTex] - Thapa, S., Gardner, R. W., Herner, K., Hufnagel, D., Lesny, D., & Rynge, M. (2018). Homogenizing OSG and XSEDE: Providing Access to XSEDE Allocations Through OSG Infrastructure. Proceedings of the Practice and Experience on Advanced Research Computing, 15:1–15:7. https://doi.org/10.1145/3219104.3219157
[BibTex] - Tovar, B., Ferreira da Silva, R., Juve, G., Deelman, E., Allcock, W., Thain, D., & Livny, M. (2018). A Job Sizing Strategy for High-Throughput Scientific Workflows. IEEE Transactions on Parallel and Distributed Systems, 29(2), 240–253. https://doi.org/10.1109/TPDS.2017.2762310 (Funding Acknowledgments: DOE ER26110)
[BibTex]
2017
- Abbott, B. P., Abbott, R., Abbott, T. D., Acernese, F., Ackley, K., Adams, C., Adams, T., Addesso, P., Adhikari, R. X., Adya, V. B., & others. (2017). Upper limits on gravitational waves from Scorpius X-1 from a model-based cross-correlation search in Advanced LIGO data. The Astrophysical Journal, 847(1), 47.
[BibTex] - Abbott, B. P., Abbott, R., Abbott, T. D., Acernese, F., Ackley, K., Adams, C., Adams, T., Addesso, P., Adhikari, R. X., Adya, V. B., & others. (2017). Search for intermediate mass black hole binaries in the first observing run of Advanced LIGO. Physical Review D, 96(2), 022001.
[BibTex] - Abbott, B. P., Abbott, R., Abbott, T. D., Acernese, F., Ackley, K., Adams, C., Adams, T., Addesso, P., Adhikari, R. X., Adya, V. B., & others. (2017). Search for gravitational waves from Scorpius X-1 in the first Advanced LIGO observing run with a hidden Markov model. Physical Review D, 95(12), 122003.
[BibTex] - Abbott, B. P., Abbott, R., Abbott, T. D., Acernese, F., Ackley, K., Adams, C., Adams, T., Addesso, P., Adhikari, R. X., Adya, V. B., & others. (2017). First low-frequency Einstein@ Home all-sky search for continuous gravitational waves in Advanced LIGO data. Physical Review D, 96(12), 122004.
[BibTex] - Abbott, B. P., Abbott, R., Abbott, T. D., Acernese, F., Ackley, K., Adams, C., Adams, T., Addesso, P., Adhikari, R. X., Adya, V. B., & others. (2017). All-sky search for periodic gravitational waves in the O1 LIGO data. Physical Review D, 96(6), 062002.
[BibTex] - Callaghan, S., Juve, G., Vahi, K., Maechling, P. J., Jordan, T. H., & Deelman, E. (2017). rvGAHP - Push-based Job Submission using Reverse SSH Connections. 12th Workshop on Workflows in Support of Large-Scale Science (WORKS’17). (Funding Acknowledgments: NSF 1664162 and 1443047)
[BibTex] - Deelman, E., Carothers, C., Mandal, A., Tierney, B., Vetter, J. S., Baldin, I., Castillo, C., Juve, G., Krol, D., Lynch, V., Mayer, B., Meredith, J., Proffen, T., Ruth, P., & Ferreira da Silva, R. (2017). PANORAMA: An Approach to Performance Modeling and Diagnosis of Extreme Scale Workflows. International Journal of High Performance Computing Applications, 31(1), 4–18. https://doi.org/10.1177/1094342015594515 (Funding Acknowledgments: DOE DE-SC0012636)
[BibTex] - Ferreira da Silva, R., Callaghan, S., & Deelman, E. (2017). On the Use of Burst Buffers for Accelerating Data-Intensive Scientific Workflows. 12th Workshop on Workflows in Support of Large-Scale Science (WORKS’17). https://doi.org/10.1145/3150994.3151000 (Funding Acknowledgments: DOE DE-SC0012636, NSF 1664162)
[BibTex] - Ferreira da Silva, R., Filgueira, R., Pietri, I., Jiang, M., Sakellariou, R., & Deelman, E. (2017). A Characterization of Workflow Management Systems for Extreme-Scale Applications. Future Generation Computer Systems, 75, 228–238. https://doi.org/10.1016/j.future.2017.02.026 (Funding Acknowledgments: DOE DE-SC0012636, DE-AC52-07NA27344)
[BibTex] - Gil, Y., Garijo, D., Ratnakar, V., Mayani, R., Adusumilli, R., Boyce, H., Srivastava, A., & Mallick, P. (2017). Towards Continuous Scientific Data Analysis and Hypothesis Evolution. Thirty-First AAAI Conference on Artificial Intelligence, 4406–4414. ()
[BibTex] - Jayatilaka, B., Levshina, T., Sehgal, C., Gardner, R., Rynge, M., & Wurthwein, F. (2017). The OSG Open Facility: an on-ramp for opportunistic scientific computing. Journal of Physics: Conference Series, 898(8), 082048. http://stacks.iop.org/1742-6596/898/i=8/a=082048
[BibTex] - Lynch, V., Calvo, J. B., Deelman, E., Ferreira da Silva, R., Goswami, M., Hui, Y., Lingerfelt, E., & Vetter, J. (2017). Distributed Workflows for Modeling Experimental Data. 2017 IEEE High Performance Extreme Computing Conference (HPEC’17). https://doi.org/10.1109/HPEC.2017.8091071 (Funding Acknowledgments: DOE DE-SC0012636)
[BibTex] - Mandal, A., Ruth, P., Baldin, I., Ferreira da Silva, R., & Deelman, E. (2017). Toward Prioritization of Data Flows for Scientific Workflows Using Virtual Software Defined Exchanges. First International Workshop on Workflow Science (WoWS 2017), 566–575. https://doi.org/10.1109/eScience.2017.92 (Funding Acknowledgments: DOE DE-SC0012636)
[BibTex] - Poehlman, W. L., Rynge, M., Balamurugan, D., Mills, N., & Feltus, F. A. (2017). OSG-KINC: High-throughput gene co-expression network construction using the open science grid. 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 1827–1831. https://doi.org/10.1109/BIBM.2017.8217938
[BibTex] - Santana-Perez, I., Ferreira da Silva, R., Rynge, M., Deelman, E., Perez-Hernandez, M. S., & Corcho, O. (2017). Reproducibility of Execution Environments in Computational Science Using Semantics and Clouds. Future Generation Computer Systems, 67, 354–367. https://doi.org/10.1016/j.future.2015.12.017 (Funding Acknowledgments: NSF ACI SI2-SSI 1148515, NSF FutureGrid 0910812)
[BibTex] - Scientific, L. I. G. O., Abbott, B. P., Abbott, R., Abbott, T. D., Acernese, F., Ackley, K., Adams, C., Adams, T., Addesso, P., Adhikari, R. X., & others. (2017). GW170104: observation of a 50-solar-mass binary black hole coalescence at redshift 0.2. Physical Review Letters, 118(22), 221101.
[BibTex] - Taylor, I. J., Brinckman, A., Deelman, E., Ferreira da Silva, R., Gupta, S., Nabrzyski, J., Park, S., & Vahi, K. (2017). Accelerating Circuit Realization via a Collaborative Gateway of Innovations. 9th International Workshop on Science Gateways (IWSG 2017). (Funding Acknowledgments: DARPA HR0011-16-C-0043)
[BibTex]
2016
- Chen, W., Ferreira da Silva, R., Deelman, E., & Fahringer, T. (2016). Dynamic and Fault-Tolerant Clustering for Scientific Workflows. IEEE Transactions on Cloud Computing, 4(1), 49–62. https://doi.org/10.1109/TCC.2015.2427200 (Funding Acknowledgments: NSF IIS-0905032, NSF ACI SI2-SSI 1148515, and NSF FutureGrid 0910812)
[BibTex] - Deelman, E., Vahi, K., Rynge, M., Juve, G., Mayani, R., & Ferreira da Silva, R. (2016). Pegasus in the Cloud: Science Automation through Workflow Technologies. IEEE Internet Computing, 20(1), 70–76. https://doi.org/10.1109/MIC.2016.15 (Funding Acknowledgments: NSF ACI SI2-SSI 1148515, NSF ACI 1245926, NSF FutureGrid 0910812, NHGRI 1U01 HG006531-01)
[BibTex] - Ferreira da Silva, R., Deelman, E., Filgueira, R., Vahi, K., Rynge, M., Mayani, R., & Mayer, B. (2016). Automating Environmental Computing Applications with Scientific Workflows. Environmental Computing Workshop (ECW’16), IEEE 12th International Conference on e-Science, 400–406. https://doi.org/10.1109/eScience.2016.7870926 (Funding Acknowledgments: DOE DESC0012636, NSF ACI SI2-SSI 1148515)
[BibTex] - Ferreira da Silva, R., Filgueira, R., Deelman, E., Pairo-Castineira, E., Overton, I. M., & Atkinson, M. (2016). Using Simple PID Controllers to Prevent and Mitigate Faults in Scientific Workflows. 11th Workflows in Support of Large-Scale Science (WORKS’16), 15–24. (Funding Acknowledgments: DOE DE-SC0012636)
[BibTex] - Filgueira, R., Ferreira da Silva, R., Krause, A., Deelman, E., & Atkinson, M. (2016). Asterism: Pegasus and dispel4py hybrid workflows for data-intensive science. 7th International Workshop on Data-Intensive Computing in the Clouds (DataCloud’16), 1–8. https://doi.org/10.1109/DataCloud.2016.004 (Funding Acknowledgments: NSF ACI SI2-SSI 1148515)
[BibTex] - Gaikwad, P., Mandal, A., Ruth, P., Juve, G., Krol, D., & Deelman, E. (2016). Anomaly Detection for Scientific Workflow Applications on Networked Clouds. IEEE 2016 International Conference on High Performance Computing & Simulation (HPCS 2016). https://doi.org/10.1109/HPCSim.2016.7568396 (Funding Acknowledgments: DOE DE-SC0012636)
[BibTex] - Krol, D., Ferreira da Silva, R., Deelman, E., & Lynch, V. E. (2016). Workflow Performance Profiles: Development and Analysis. In Euro-Par 2016: Parallel Processing Workshops (pp. 108–120). https://doi.org/10.1007/978-3-319-58943-5_9 (Funding Acknowledgments: DOE DE-SC0012636)
[BibTex] - Krol, D., Kitowski, J., Ferreira da Silva, R., Juve, G., Vahi, K., Rynge, M., & Deelman, E. (2016). Science Automation in Practice: Performance Data Farming in Workflows. 21st IEEE International Conference on Emerging Technologies and Factory Automation (ETFA). https://doi.org/10.1109/ETFA.2016.7733677 (Funding Acknowledgments: DOE DE-SC0012636)
[BibTex] - Liu, Y., Khan, S. M., Wang, J., Rynge, M., Zhang, Y., Zeng, S., Chen, S., Maldonado dos Santos, J. V., Valliyodan, B., Calyam, P. P., Merchant, N., Nguyen, H. T., Xu, D., & Joshi, T. (2016). PGen: large-scale genomic variations analysis workflow and browser in SoyKB. BMC Bioinformatics, 17(13), 337. https://doi.org/10.1186/s12859-016-1227-y
[BibTex] - Mandal, A., Ruth, P., Baldin, I., Krol, D., Juve, G., Mayani, R., Ferreira da Silva, R., Deelman, E., Meredith, J., Vetter, J., Lynch, V., Mayer, B., Wynne III, J., Blanco, M., Carothers, C., LaPre, J., & Tierney, B. (2016). Toward an End-to-end Framework for Modeling, Monitoring, and Anomaly Detection for Scientific Workflows. Workshop on Large-Scale Parallel Processing (LSPP 2016), 1370–1379. https://doi.org/10.1109/IPDPSW.2016.202 (Funding Acknowledgments: DOE DE-SC0012636)
[BibTex] - Nawaz, H., Juve, G., Ferreira da Silva, R., & Deelman, E. (2016). Performance Analysis of an I/O-Intensive Workflow executing on Google Cloud and Amazon Web Services. 18th Workshop on Advances in Parallel and Distributed Computational Models (APDCM), 535–544. https://doi.org/10.1109/IPDPSW.2016.90 (Funding Acknowledgments: DOE DE-SC0012636)
[BibTex] - Poehlman, W. L., Rynge, M., Branton, C., Balamurugan, D., & Feltus, F. A. (2016). OSG-GEM: Gene Expression Matrix Construction Using the Open Science Grid. Bioinformatics and Biology Insights, 10, 133–141. https://doi.org/10.4137/BBI.S38193
[BibTex] - Schlagkamp, S., Ferreira da Silva, R., Allcock, W., Deelman, E., & Schwiegelshohn, U. (2016). Consecutive Job Submission Behavior at Mira Supercomputer. 25th ACM International Symposium on High-Performance Parallel and Distributed Computing (HPDC). https://doi.org/10.1145/2907294.2907314 (Funding Acknowledgments: DOE ER26110, DOE DE-SC0012636)
[BibTex] - Schlagkamp, S., Ferreira da Silva, R., Deelman, E., & Schwiegelshohn, U. (2016). Understanding User Behavior: from HPC to HTC. International Conference on Computational Science (ICCS). https://doi.org/10.1016/j.procs.2016.05.397 (Funding Acknowledgments: DOE ER26110, DOE DE-SC0012636)
[BibTex] - Stodden, V., McNutt, M., Balley, D. H., Deelman, E., Gil, Y., Hanson, B., Heroux, M. A., Ioannidis, J. P. A., & Taufer. (2016). Enhancing reproducibility for computational methods. Science, 354(6317), 1240–1241. https://doi.org/10.1126/science.aah6168
[BibTex] - Swetnam, T. L., Pelletier, J. D., Rasmussen, C., Callahan, N. R., Merchant, N., Lyons, E., Rynge, M., Liu, Y., Nandigam, V., & Crosby, C. (2016). Scaling GIS Analysis Tasks from the Desktop to the Cloud Utilizing Contemporary Distributed Computing and Data Management Approaches: A Case Study of Project-based Learning and Cyberinfrastructure Concepts. XSEDE16 Conference on Diversity, Big Data, and Science at Scale, 21:1–21:6. https://doi.org/10.1145/2949550.2949573
[BibTex]
2015
- Bryk, P., Malawski, M., Juve, G., & Deelman, E. (2015). Storage-aware Algorithms for Scheduling of Workflow Ensembles in Clouds. Journal of Grid Computing, 14(2), 359–378. https://doi.org/10.1007/s10723-015-9355-6 (Funding Acknowledgments: DOE ER26110)
[BibTex] - Chen, W., Ferreira da Silva, R., Deelman, E., & Sakellariou, R. (2015). Using Imbalance Metrics to Optimize Task Clustering in Scientific Workflow Executions. Future Generation Computer Systems, 46, 69–84. https://doi.org/10.1016/j.future.2014.09.014 (Funding Acknowledgments: NSF IIS-0905032 and NSF FutureGrid 0910812)
[BibTex] - Deelman, E., Carothers, C., Mandal, A., Tierney, B., Vetter, J. S., Baldin, I., Castillo, C., Juve, G., Krol, D., Lynch, V., Mayer, B., Meredith, J., Proffen, T., Ruth, P., & Ferreira da Silva, R. (2015). Panorama: Modeling The Performance of Scientific Workflows. Workshop on Modeling and Simulation of Systems and Applications (ModSim 2015). http://pegasus.isi.edu/publications/2015/deelman-modsim-2015.pdf (Funding Acknowledgments: DOE DE-SC0012636)
[BibTex] - Deelman, E., Vahi, K., Juve, G., Rynge, M., Callaghan, S., Maechling, P. J., Mayani, R., Chen, W., Ferreira da Silva, R., Livny, M., & Wenger, K. (2015). Pegasus: a Workflow Management System for Science Automation. Future Generation Computer Systems, 46, 17–35. https://doi.org/10.1016/j.future.2014.10.008 (Funding Acknowledgments: NSF ACI SDCI 0722019, NSF ACI SI2-SSI 1148515 and NSF OCI-1053575)
[BibTex] - Ferreira da Silva, R., Juve, G., Rynge, M., Deelman, E., & Livny, M. (2015). Online Task Resource Consumption Prediction for Scientific Workflows. Parallel Processing Letters, 25(3). https://doi.org/10.1142/S0129626415410030 (Funding Acknowledgments: DOE ER26110)
[BibTex] - Ferreira da Silva, R., Rynge, M., Juve, G., Sfiligoi, I., Deelman, E., Letts, J., Wurthwein, F., & Livny, M. (2015). Characterizing a High Throughput Computing Workload: The Compact Muon Solenoid (CMS) Experiment at LHC. Procedia Computer Science, International Conference On Computational Science, ICCS 2015 Computational Science at the Gates of Nature, 51, 39–48. https://doi.org/10.1016/j.procs.2015.05.190 (Funding Acknowledgments: DOE ER26110)
[BibTex] - Glatard, T., Ferreira da Silva, R., Boujelben, N., Adalat, R., Beck, N., Rioux, P., Rousseau, M.-E., Deelman, E., & Evans, A. C. (2015). Boutiques: an application-sharing system based on Linux containers. NeuroInformatics 2015. https://doi.org/10.3389/conf.fnins.2015.91.00012
[BibTex] - Glatard, T., Lewis, L. B., Ferreira da Silva, R., Adalat, R., Beck, N., Lepage, C., Rioux, P., Rousseau, M.-E., Sherif, T., Deelman, E., Khalili-Mahani, N., & Evans, A. C. (2015). Reproducibility of neuroimaging analyses across operating systems. Frontiers in Neuroinformatics, 9(12). https://doi.org/10.3389/fninf.2015.00012 (Funding Acknowledgments: NSF ACI SI2-SSI 1148515)
[BibTex] - Howison, J., Deelman, E., McLennan, M. J., Ferreira da Silva, R., & Herbsleb, J. D. (2015). Understanding the scientific software ecosystem and its impact: Current and future measures. Research Evaluation, 24(4), 454–470. https://doi.org/10.1093/reseval/rvv014 (Funding Acknowledgments: NSF ACI SI2-SSI 1148515)
[BibTex] - Juve, G., Tovar, B., Ferreira da Silva, R., Krol, D., Thain, D., Deelman, E., Allcock, W., & Livny, M. (2015). Practical Resource Monitoring for Robust High Throughput Computing. Workshop on Monitoring and Analysis for High Performance Computing Systems Plus Applications. https://doi.org/10.1109/CLUSTER.2015.115 (Funding Acknowledgments: DOE ER26110, DOE DE-SC0012636)
[BibTex] - Malawski, M., Figiela, K., Bubak, M., Deelman, E., & Nabrzyski, J. (2015). Scheduling Multilevel Deadline-Constrained Scientific Workflows on Clouds Based on Cost Optimization. Scientific Programming, 2015, 1–13. https://doi.org/10.1155/2015/680271 (Funding Acknowledgments: NSF ACI SI2-SSI 1148515, DOE ER26110)
[BibTex] - Malawski, M., Juve, G., Deelman, E., & Nabrzyski, J. (2015). Algorithms for Cost- and Deadline-Constrained Provisioning for Scientific Workflow Ensembles in IaaS Clouds. Future Generation Computer Systems, 48, 1–18. https://doi.org/10.1016/j.future.2015.01.004 (Funding Acknowledgments: DOE ER26110, NSF ACI SI2-SSI 1148515)
[BibTex] - Mandal, A., Ruth, P., Baldin, I., Xin, Y., Castillo, C., Juve, G., Rynge, M., Deelman, E., & Chase, J. (2015). Adapting Scientific Workflows on Networked Clouds Using Proactive Introspection. IEEE/ACM Utility and Cloud Computing (UCC). https://doi.org/10.1109/UCC.2015.32 (Funding Acknowledgments: NSF CC-NIE ADAMANT project (NSF ACI 1245926), DoE DROPS project (ASCR DE-SC0005286), DoE SciDAC SUPER project (DE-FG02-11ER26050/DE-SC0006925), NSF SDCI Missing Link project (NSF ACI 1032573), and the NSF GENI project (GENI Project Office Award #1872))
[BibTex] - Mayer, B., Worley, P., Ferreira da Silva, R., & Gaddis, A. (2015). Climate Science Performance, Data and Productivity on Titan. Cray User Group Conference. http://pegasus.isi.edu/publications/2015/mayer-cug-2015.pdf (Funding Acknowledgments: DOE DE-SC0012636)
[BibTex] - Oda, R., Cordeiro, D., Ferreira da Silva, R., Deelman, E., & Braghetto, K. (2015). The Case for Resource Sharing in Scientific Workflow Executions. XVI Simposio Em Sistemas Computacionais De Alto Desempenho (WSCAD). http://pegasus.isi.edu/publications/2015/oda-wscad-2015.pdf (Funding Acknowledgments: NSF ACI SI2-SSI 1148515)
[BibTex] - Quick, R., Hayashi, S., Meroueh, S., Rynge, M., Teige, S., Wang, B., & Xu, D. (2015). Building a Chemical-Protein Interactome on the Open Science Grid. Proceedings of Science, International Symposium on Grids and Clouds (ISGC) 2015. http://pegasus.isi.edu/publications/2015/ISGC2015_024.pdf
[BibTex]
2014
- Ferreira da Silva, R., Chen, W., Juve, G., Vahi, K., & Deelman, E. (2014). Community Resources for Enabling Research in Distributed Scientific Workflows. 10th IEEE International Conference on e-Science (EScience 2014). https://doi.org/10.1109/eScience.2014.44 (Funding Acknowledgments: OCI SI2-SSI program grant #1148515, DOE contract for dv/dt ER26110)
[BibTex] - Ferreira da Silva, R., Fahringer, T., Durillo, J. J., & Deelman, E. (2014). A Unified Approach for Modeling and Optimization of Energy, Makespan and Reliability for Scientific Workflows on Large-Scale Computing Infrastructures. Workshop on Modeling and Simulation of Systems and Applications (MODSIM). http://pegasus.isi.edu/publications/2014/2014-modsim.pdf (Funding Acknowledgments: DOE contract for dv/dt ER26110).)
[BibTex] - Glatard, T., Lewis, L. B., Ferreira da Silva, R., Rousseau, M.-E., Lepage, C., Rioux, P., Mahani, N., Deelman, E., & Evans, A. C. (2014). Extending provenance information in CBRAIN to address reproducibility issues across computing platforms. NeuroInformatics 2014. http://pegasus.isi.edu/publications/2014/2014-neuroinformatics.pdf
[BibTex] - Juve, G., Tovar, B., Ferreira da Silva, R., Robinson, C., Thain, D., Deelman, E., Allcock, W., & Livny, M. (2014). Practical Resource Monitoring for Robust High Throughput Computing (Technical Report 14-950; Number Technical Report 14-950). University of Southern California. http://pegasus.isi.edu/publications/2014/2014-dvdtreport.pdf (Funding Acknowledgments: DOE contract for dv/dt ER26110)
[BibTex] - Malawski, M., Figiela, K., Bubak, M., Deelman, E., & Nabrzyski, J. (2014). Cost Optimization of Execution of Multi-level Deadline-Constrained Scientific Workflows on Clouds. Parallel Processing and Applied Mathematics, 251–260. https://doi.org/10.1007/978-3-642-55224-3_24 (Funding Acknowledgments: OCI SI2-SSI program grant #1148515)
[BibTex] - McLennan, M., Clark, S., Deelman, E., Rynge, M., Vahi, K., McKenna, F., Kearney, D., & Song, C. (2014). HUBzero and Pegasus: integrating scientific workflows into science gateways. Concurrency and Computation: Practice and Experience. https://doi.org/10.1002/cpe.3257 (Funding Acknowledgments: OCI SI2-SSI program grant #1148515, OCI SDCI program grant #0722019)
[BibTex] - Pietri, I., Juve, G., Deelman, E., & Sakellariou, R. (2014). A Performance Model to Estimate Execution Time of Scientific Workflows on the Cloud. 9th Workshop on Workflows in Support of Large-Scale Science (WORKS). https://doi.org/10.1109/WORKS.2014.12 (Funding Acknowledgments: DOE contract for dv/dt ER26110)
[BibTex] - Santana-Perez, I., Ferreira da Silva, R., Rynge, M., Deelman, E., Perez-Hernandez, M. S., & Corcho, O. (2014). Leveraging Semantics to Improve Reproducibility in Scientific Workflows. The Reproducibility at XSEDE Workshop. http://pegasus.isi.edu/publications/2014/2014-xsede.pdf (Funding Acknowledgments: NSF FutureGrid 0910812)
[BibTex] - Santana-Perez, I., Ferreira da Silva, R., Rynge, M., Deelman, E., Perez-Hernandez, M. S., & Corcho, O. (2014). A Semantic-Based Approach to Attain Reproducibility of Computational Environments in Scientific Workflows: A Case Study. 1st International Workshop on Reproducibility in Parallel Computing (REPPAR), in Conjunction with Euro-Par 2014. http://pegasus.isi.edu/publications/2014/2014-reppar.pdf (Funding Acknowledgments: NSF FutureGrid 0910812)
[BibTex] - Srinivasan, S., Juve, G., Ferreira da Silva, R., Vahi, K., & Deelman, E. (2014). A Cleanup Algorithm for Implementing Storage Constraints in Scientific Workflow Executions. 9th Workshop on Workflows in Support of Large-Scale Science (WORKS). https://doi.org/10.1109/WORKS.2014.8 (Funding Acknowledgments: OCI SI2-SSI program grant #1148515)
[BibTex]
2013
- Azarnoosh, S., Rynge, M., Juve, G., Nieć, E. D. M., Malawski, M., & Ferreira da Silva, R. (2013). Introducing PRECIP: An API for Managing Repeatable Experiments in the Cloud. Workshop on Cloud Computing for Research Collaborations (CRC). http://pegasus.isi.edu/publications/2013/precip-cloudcom-2013.pdf (Funding Acknowledgments: National Science Foundation under Grant No. 0910812 and AWS Educational Grant)
[BibTex] - Berriman, G. B., Juve, G., Vöckler, J.-S., Deelman, E., & Rynge, M. (2013). The Application of Cloud Computing to Scientific Workflows: A Study of Cost and Performance. Proceedings of the Royal Society A, 371(1983). http://rsta.royalsocietypublishing.org/content/371/1983/20120066.abstract (Funding Acknowledgments: NSF OCI-0910812, NSF OCI-0943725, NASA NCC5-626, and Amazon Educational Grant)
[BibTex] - Chen, W., Deelman, E., & Sakellariou, R. (2013). Imbalance Optimization in Scientific Workflows. International Conference on Supercomputing (ICS 2013). (Funding Acknowledgments: NSF IIS-0905032 and NSF FutureGrid 0910812)
[BibTex] - Chen, W., Ferreira da Silva, R., Deelman, E., & Sakellariou, R. (2013). Balanced Task Clustering in Scientific Workflows. 9th IEEE International Conference on e-Science (EScience 2013). http://pegasus.isi.edu/publications/2013/chen-clustering-escience2013.pdf (Funding Acknowledgments: NSF IIS-0905032 and NSF FutureGrid 0910812)
[BibTex] - Deelman, E., Juve, G., Malawski, M., & Nabrzyski, J. (2013). Hosted Science: Managing Computational Workloads in the Cloud. Parallel Processing Letters, 23(2). http://www.worldscientific.com/doi/pdf/10.1142/S0129626413400045 (Funding: NSF OCI-0943725 and OCI-1148515)
[BibTex] - Ferreira da Silva, R., Juve, G., Deelman, E., Glatard, T., Desprez, F., Thain, D., Tovar, B., & Livny, M. (2013). Toward Fine-Grained Online Task Characteristics Estimation in Scientific Workflows. 8th Workshop On Workflows in Support of Large-Scale Science (WORKS). http://pegasus.isi.edu/publications/2013/ferreira-da-silva-task-estimation-works2013.pdf (Funding Acknowledgments: DOE contract for dv/dt ER26110, EC FP7 Program under grant agreement 312579 ER-flow)
[BibTex] - Juve, G., Chervenak, A., Deelman, E., Bharathi, S., Mehta, G., & Vahi, K. (2013). Characterizing and Profiling Scientific Workflows. Future Generation Computer Systems, 29(3), 682–692. http://pegasus.isi.edu/publications/2013/JuveG-Characterizing.pdf
[BibTex] - Juve, G., Rynge, M., Deelman, E., Vöckler, J.-S., & Berriman, G. B. (2013). Comparing FutureGrid, Amazon EC2, and Open Science Grid for Scientific Workflows. Computing in Science and Engineering, 15(4), 20–29. http://pegasus.isi.edu/publications/2013/JuveG-Comparing.pdf (Funding: NSF OCI-0943725 and OCI-0910812, Amazon Web Services Educational Grant).)
[BibTex] - Mandal, A., Ruth, P., Baldin, I., Xin, Y., Castillo, C., Rynge, M., & Deelman, E. (2013). Evaluating I/O Aware Network Management for Scientific Workflows on Networked Clouds. The 3rd International Workshop on Network-Aware Data Management, in Conjunction with SC13. http://pegasus.isi.edu/publications/2013/io-aware-network-management-ndm2013.pdf (Funding Acknowledgments: NSF CC-NIE ADAMANT project (NSF ACI 1245926), DoE DROPS project (ASCR DE-SC0005286), DoE SciDAC SUPER project (DE-FG02-11ER26050/DE-SC0006925), NSF SDCI Missing Link project (NSF ACI 1032573), and the NSF GENI project (GENI Project Office Award #1872))
[BibTex] - McLennan, M., Clark, S., McKenna, F., Deelman, E., Rynge, M., Vahi, K., Kearney, D., & Song, C. (2013). Bringing Scientific Workflow to the Masses via Pegasus and HUBzero. Proceedings of the 5th International Workshop on Science Gateways. http://pegasus.isi.edu/publications/2013/McLennan_Pegasus_Hubzero.pdf (Funding Acknowledgments: NSF grants CBET-0941302, CMMI-0927178, OCI-1148515, and OCI-0943705)
[BibTex] - Pietri, I., Malawski, M., Juve, G., Deelman, E., Nabrzyski, J., & Sakellariou, R. (2013). Energy-Constrained Provisioning for Scientific Workflow Ensembles. IEEE International Conference on Cloud and Green Computing (CGC13). http://pegasus.isi.edu/publications/2013/PietriI-Energy.pdf
[BibTex] - Rynge, M., Juve, G., Kinney, J., Good, J., Berriman, G. B., Merrihew, A., & Deelman, E. (2013). Producing an Infrared Multiwavelength Galactic Plane Atlas using Montage, Pegasus and Amazon Web Services. 23rd Annual Astronomical Data Analysis Software and Systems (ADASS) Conference. http://pegasus.isi.edu/publications/2013/rynge-montage-pegasus-amazon-adass2013.pdf (Funding Acknowledgments: OCI SI2-SSI program grant #1148515)
[BibTex] - Vahi, K., Harvey, I., Samak, T., Gunter, D., Evans, K., Rogers, D., Taylor, I., Goode, M., Silva, F., Al-Shakarchi, E., Mehta, G., & andrew Jones, E. D. (2013). A Case Study into Using Common Real-Time Workflow Monitoring Infrastructure for Scientific Workflows. Journal of Grid Computing, 11(3), 381–406. http://link.springer.com/article/10.1007%2Fs10723-013-9265-4 (Funding Acknowledgments: NSF grant OCI-0943705)
[BibTex] - Vahi, K., Rynge, M., Juve, G., Mayani, R., & Deelman, E. (2013). Rethinking Data Management for Big Data Scientific Workflows. Workshop on Big Data and Science: Infrastructure and Services. http://pegasus.isi.edu/publications/2013/Vahi-PegasusLite-IEEE-BigData-2013.pdf (Funding Acknowledgments: OCI SDCI program grant #0722019 and OCI SI2-SSI program grant #1148515)
[BibTex]
2012
- Agarwal, R., Juve, G., & Deelman, E. (2012). Peer-to-Peer Data Sharing for Scientific Workflows on Amazon EC2. 7th Workshop on Workflows in Support of Large-Scale Science (WORKS12). http://pegasus.isi.edu/publications/2012/Agarwal-WORKS-2012.pdf (Funding Acknowledgments: NSF OCI-0943725, Viterbi-India Program) )
[BibTex] - Berriman, G. B., Brinkworth, C., Gelino, D., Wittman, D. K., Deelman, E., Juve, G., Rynge, M., & Kinney, J. (2012). A Tale Of 160 Scientists, Three Applications, A Workshop and A Cloud. Astronomical Data Analysis Software and Systems XXII.
[BibTex] - Chen, W., & Deelman, E. (2012). WorkflowSim: A Toolkit for Simulating Scientific Workflows in Distributed Environments. The 8th IEEE International Conference on EScience 2012 (EScience 2012). http://pegasus.isi.edu/publications/2012/WChen-WorkflowSim-eScience12.pdf (Funding Acknowledgments: NSF IIS-0905032)
[BibTex] - Chen, W., & Deelman, E. (2012). Fault Tolerant Clustering in Scientific Workflows. IEEE 6th International Workshop on Scientific Workflows (SWF 2012) in Conjunction with IEEE 8th World Congress on Services (SERVICES 2012). http://pegasus.isi.edu/publications/2012/WChen-FTC-Services12.pdf (Funding Acknowledgments: NSF IIS-0905032)
[BibTex] - Chen, W., & Deelman, E. (2012). Integration of Workflow Partitioning and Resource Provisioning. The 12th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGrid 2012), Doctoral Symposium. http://pegasus.isi.edu/publications/2012/WChen-Integration-CCGrid12.pdf (Funding Acknowledgments: NSF IIS-0905032) )
[BibTex] - Chervenak, A. L., Smith, D. E., Chen, W., & Deelman, E. (2012). Integrating Policy with Scientific Workflow Management for Data-Intensive Applications. The 7th Workshop on Workflows in Support of Large-Scale Science (WORKS12). http://pegasus.isi.edu/publications/2012/WChen-PDPS-WORKS12.pdf (Funding Acknowledgments: NSF IIS-0905032 and FutureGrid 0910812)
[BibTex] - Deelman, E., Juve, G., & Berriman, G. B. (2012). Using Clouds for Science, Is it Just Kicking the Can Down The Road? 2nd International Conference on Cloud Computing and Services Science (CLOSER 2012). http://pegasus.isi.edu/publications/2012/Deelman-CLOSER-2012.pdf (Funding Acknowledgments: NSF OCI-0943725)
[BibTex] - Duffy, C., Gil, Y., Deelman, E., Marru, S., Pierce, M., Demir, I., & Wiener, G. (2012). Designing a road map for geoscience workflows. Eos, Transactions American Geophysical Union, 93(24), 225–226. https://doi.org/10.1029/2012EO240002
[BibTex] - Juve, G., Deelman, E., Berriman, G. B., Berman, B. P., & Maechling, P. J. (2012). An Evaluation of the Cost and Performance of Scientific Workflows on Amazon EC2. Journal of Grid Computing, 10(1), 5–21. http://pegasus.isi.edu/publications/2012/Juve-JGC-2012.pdf (Funding Acknowledgments: NSF CCF-0725332, NSF OCI-0722019, and NASA NCC5-626)
[BibTex] - Malawski, M., Juve, G., Deelman, E., & Nabrzyski, J. (2012). Cost- and Deadline-Constrained Provisioning for Scientific Workflow Ensembles in IaaS Clouds. 24th IEEE/ACM International Conference on Supercomputing (SC12). http://pegasus.isi.edu/publications/2012/Malawski-Ensemble.pdf (Funding Acknowledgments: NSF OCI-0943725)
[BibTex] - Rynge, M., Juve, G., Vahi, K., Callaghan, S., Mehta, G., Maechling, P. J., & Deelman, E. (2012). Enabling Large-scale Scientific Workflows on Petascale Resources Using MPI Master/Worker. XSEDE12. http://pegasus.isi.edu/publications/2012/XSEDE12-Rynge-pegasus-mpi-cluster.pdf (Funding Acknowledgments: NSF OCI-0722019, NSF OCI-0943725, NSF EAR-0529922, USGS 07HQAG0008, NSF OCI-1053575)
[BibTex] - Samak, T., Gunter, D., Goode, M., Deelman, E., Juve, G., & Silva, F. (2012). Failure Analysis of Distributed Scientific Workflows Executing in the Cloud. 8th International Conference on Network and Service Management (CNSM 2012). (Funding Acknowledgments: DOE DE-AC02-05CH11231 and NSF OCI-0943705) )
[BibTex] - Vahi, K., Harvey, I., Samak, T., Gunter, D., Evans, K., Rogers, D., Taylor, I., Goode, M., Silva, F., Al-Shakarchi, E., andrew Jones, G. M., & Deelman, E. (2012). A General Approach to Real-time Workflow Monitoring. The 7th Workshop on Workflows in Support of Large-Scale Science (WORKS12). http://pegasus.isi.edu/publications/2012/Vahi-Stampede-WORKS-2012.pdf (Funding Acknowledgments: NSF OCI-0943705) )
[BibTex]
2011
- Berriman, G. B., Good, J., Deelman, E., & Alexov, A. (2011). Ten years of software sustainability at the Infrared Processing and Analysis Center. Phil. Trans. R. Soc. A, 369, 3384–3397. http://doi.org/10.1098/rsta.2011.0136
[BibTex] - Byun, E.-K., Kee, Y.-S., Kim, J.-S., Deelman, E., & Maeng, S. (2011). BTS: Resource Capacity Estimate for Time-targeted Science Workflows. Journal of Parallel and Distributed Computing: Special Issue on Cloud Computing, 71(6), 848–862. http://www.sciencedirect.com/science/article/pii/S0743731511000207
[BibTex] - Callaghan, S., Maechling, P., Small, P., Milner, K., Juve, G., Jordan, T. H., Deelman, E., Mehta, G., Vahi, K., Gunter, D., & Beattie, K. (2011). Metrics for Heterogeneous Scientific Workflows: A Case Study of an Earthquake Science Application. International Journal of High Performance Computing Applications, 25(3), 274–285. (Funding Acknowledgments: TeraGrid TG-MCA03S012, NSF OCI-0722019, NSF OCI-0749313, NSF EAR-0106924 and USGS 02HQAG0008) )
[BibTex] - Chen, W., & Deelman, E. (2011). Partitioning and Scheduling Workflows across Multiple Sites with Storage Constraints. 9th International Conference on Parallel Processing and Applied Mathmatics. http://pegasus.isi.edu/publications/2011/WChen-Partitioning_and_Scheduling.pdf (Funding Acknowledgments: NSF IIS-0905032)
[BibTex] - Chen, W., & Deelman, E. (2011). Workflow Overhead Analysis and Optimizations. 6th Workshop on Workflows in Support of Large-Scale Science (WORKS 11). http://pegasus.isi.edu/publications/2011/WChen-Workflow_Overhead_Analysis_and_Optimizations.pdf (Funding Acknowledgments: NSF IIS-0905032)
[BibTex] - Gunter, D., Deelman, E., Samak, T., Brooks, C., Goode, M., Juve, G., Mehta, G., Moraes, P., Silva, F., Swany, M., & Vahi, K. (2011). Online Workflow Management and Performance Analysis with Stampede. 7th International Conference on Network and Service Management (CNSM-2011).
[BibTex] - Juve, G., & Deelman, E. (2011). Wrangler: Virtual Cluster Provisioning for the Cloud. Proceedings of the 20th International Symposium on High Performance Distributed Computing (HPDC11). (Funding Acknowledgments: NSF OCI-0943725)
[BibTex] - Juve, G., & Deelman, E. (2011). Automating Application Deployment in Infrastructure Clouds. 3rd IEEE International Conference on Cloud Computing Technology and Science (CloudCom 2011). (Funding Acknowlegements: DOE, NSF OCI-0943725, and NSF OCI-091812)
[BibTex] - Mehta, G., Deelman, E., Knowles, J. A., Chen, T., Wang, Y., Vöckler, J.-S., Buyske, S., & Matise, T. (2011). Enabling Data and Compute Intensive Workflows in Bioinformatics. 2nd International Workshop OnHigh Performance Bioinformatics and Biomedicine (HiBB 2011) in Conjunction with Euro-Par Conference 2011.
[BibTex] - Nagavaram, A., Agrawal, G., Freitas, M., Mehta, G., Mayani, R., & Deelman, E. (2011). A Cloud‐based Dynamic Workflow for Mass Spectrometry Data Analysis. Proceedings of the 7th IEEE International Conference on e-Science (e-Science 2011).
[BibTex] - Rynge, M., Juve, G., Mehta, G., Deelman, E., Larson, K., Holzman, B., Sfiligoi, I., Würthwein, F., Berriman, G. B., & Callaghan, S. (2011). Experiences Using GlideinWMS and the Corral Frontend Across Cyberinfrastructures. Proceedings of the 7th IEEE International Conference on e-Science (e-Science 2011). (Funding Acknowledgments: Open Science Grid, NSF OCI-0943725, and TeraGrid TG-CCR1000018) )
[BibTex] - Samak, T., Gunter, D., Deelman, E., Juve, G., Mehta, G., Silva, F., & Vahi, K. (2011). Online Fault and Anomaly Detection for Large-Scale Scientific Workflows. 13th IEEE International Conference on High Performance Computing and Communications (HPCC-2011). (Funding Acknowledgments: DOE DE-AC02-05CH11231, and NSF OCI-0943705)
[BibTex] - Samak, T., Gunter, D., Goode, M., Deelman, E., Mehta, G., Silva, F., & Vahi, K. (2011). Failure Prediction and Localization in Large Scientific Workflows. 6th Workshop on Workflows in Support of Large-Scale Science (WORKS 11).
[BibTex] - Vöckler, J.-S., Juve, G., Deelman, E., Rynge, M., & Berriman, G. B. (2011). Experiences Using Cloud Computing for A Scientific Workflow Application. Proceedings of 2nd Workshop on Scientific Cloud Computing (ScienceCloud 2011). http://portal.acm.org/citation.cfm?id=1996109.1996114 (Funding Acknowledgments: NSF OCI-0910812)
[BibTex] - Wang, Y., Mehta, G., Mayani, R., Lu, J., Souaiaia, T., andrew Clark, Y. C., Yoon, H. J., Wan, L., Evgrafov, O. V., Knowles, J. A., Deelman, E., & Chen, T. (2011). RseqFlow: Workflows for RNA-Seq Data Analysis. Bioinformatics, 27(18), 2598–2600. http://doi.org/10.1093/bioinformatics/btr441
[BibTex]
2010
- Berriman, G. B., Deelman, E., Groth, P., & Juve, G. (2010). The Application of Cloud Computing to the Creation of Image Mosaics and Management of Their Provenance. SPIE Conference 7740: Software and Cyberinfrastructure for Astronomy. http://pegasus.isi.edu/publications/2010/BerrimanB-ApplicationCloud.pdf
[BibTex] - Berriman, G. B., Juve, G., Deelman, E., Regelson, M., & Plavchan, P. (2010). The Application of Cloud Computing to Astronomy: A Study of Cost and Performance. In Workshop on e-Science Challenges in Astronomy and Astrophysics in Conjunction with the 6th IEEE International Conference on e-Science (e-Science 2010). (Funding Acknowledgments: NSF OCI-0438712, and NSF CCF-0725332)
[BibTex] - Bolze, R., & Deelman, E. (2010). Exploiting the Cloud of Computing Environments: An Application’s Perspective. In S. A. Ahson & M. Ilyas (Eds.), Cloud Computing and Software Services: Theory and Techniques. CRC Press.
[BibTex] - Callaghan, S., Deelman, E., Gunter, D., Juve, G., Maechling, P., Brooks, C., Vahi, K., Milner, K., Graves, R., Field, E., Okaya, D., & Jordan, T. (2010). Scaling up Workflow-based Applications. Journal of Computer and System Sciences, 76(6), 428–446. http://pegasus.isi.edu/publications/2010/CallaghanS-ScalingUp.pdf (Funding Acknowledgments: TeraGrid TG-MCA03S012, NSF OCI-0722019, and NSF OCI-0749313)
[BibTex] - Gil, Y., Ratnakar, V., & et al, E. D. (2010). Wings: Intelligent Workflow-Based Design of Computational Experiments. IEEE Intelligent Systems. http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=5396300
[BibTex] - Graves, R., Jordan, T., Callaghan, S., Deelman, E., Field, E., Juve, G., Kesselman, C., Maechling, P., Mehta, G., Milner, K., Okaya, D., Small, P., & Vahi, K. (2010). CyberShake: A Physics-Based Seismic Hazard Model for Southern California. Pure and Applied Geophysics. http://pegasus.isi.edu/publications/2010/GravesR-CyberShake.pdf (Funding Acknowledgments: NSF OCI-0438712, NSF CCF-0725332)
[BibTex] - Juve, G., & Deelman, E. (2010). Scientific Workflows and Clouds. ACM Crossroads, 16(3), 14–18.
[BibTex] - Juve, G., & Deelman, E. (2010). Scientific Workflows in the Cloud. In M. Cafaro & G. Aloisio (Eds.), Grids, Clouds and Virtualization (pp. 71–91). Springer.
[BibTex] - Juve, G., Deelman, E., Vahi, K., & Mehta, G. (2010). Experiences with Resource Provisioning for Scientific Workflows Using Corral. Scientific Programming, 18(2), 77–92. (Funding Acknowledgments: NSF OCI-0943725 and NSF OCI-0749313)
[BibTex] - Juve, G., Deelman, E., Vahi, K., Mehta, G., Berriman, B., Berman, B. P., & Maechling, P. J. (2010). Data Sharing Options for Scientific Workflows on Amazon EC2. 22nd IEEE/ACM Conference on Supercomputing (SC10). http://pegasus.isi.edu/publications/2010/JuveG-DataSharing.pdf (Funding Acknowledgments: NSF CCF-0725332, NSF OCI-0722019, and NASA NCC5-626)
[BibTex] - Kumar, V. S., Kurc, T., Ratnakar, V., Kim, J., Mehta, G., Vahi, K., Nelson, Y. L., Sadayappan, P., Deelman, E., Gil, Y., Hall, M., & Saltz, J. (2010). Parameterized Specification, Configuration and Execution of Data-intensive Scientific Workflows. Cluster Computing Journal, 13(3), 315–333. http://pegasus.isi.edu/publications/2010/Cluster-Computing-2010.pdf
[BibTex] - Sakellariou, R., Zhao, H., & Deelman, E. (2010). Mapping Workflows on Grid Resources: Experiments with the Montage Workflow. In Grids, P2P and Services Computing (pp. 119–132). Springer.
[BibTex] - Sonntag, M., Karastoyanova, D., & Deelman, E. (2010). BPEL4Pegasus: Combining Business and Scientific Workflows. International Conference on Service-Oriented Computing (ICSOC). http://pegasus.isi.edu/publications/2010/100907-BPEL4Pegasus-camera-ready.pdf
[BibTex] - Sonntag, M., Karastoyanova, D., & Deelman, E. (2010). Bridging The Gap Between Business And Scientific Workflows. e-Science 2010. http://pegasus.isi.edu/publications/2010/Bridging_The_Gap_Between_Business_And_Scientific_Workflows.pdf
[BibTex]
2009
- Deelman, E. (2009). Grids and Clouds: Making Workflow Applications Work in Heterogeneous Distributed Environments. International Journal of High Performance Computing Applications. http://pegasus.isi.edu/publications/2009/Deelman-GridAndClouds.pdf
[BibTex] - Groth, P., Deelman, E., Juve, G., Mehta, G., & Berriman, B. (2009). Pipeline-Centric Provenance Model. 4th Workshop on Workflows in Support of Large-Scale Science (WORKS 09). http://pegasus.isi.edu/publications/2009/GrothP-PipelineCentric.pdf
[BibTex] - Juve, G., Deelman, E., Vahi, K., Mehta, G., Berriman, B., Berman, B. P., & Maechling, P. J. (2009). Scientific Workflow Applications on Amazon EC2. Workshop on Cloud-Based Services and Applications. http://pegasus.isi.edu/publications/2009/JuveG-EC2.pdf
[BibTex] - Kumar, V. S., Sadayappan, P., Mehta, G., Vahi, K., Deelman, E., Ratnakar, V., Kim, J., Gil, Y., Hall, M. W., Kurç, T. M., & Saltz, J. H. (2009). An Integrated Framework for Performance-based Optimization of Scientific Workflows. Conference on High Performance and Distributed Computing (HPDC). http://pegasus.isi.edu/publications/2009/hpdc153-kumar.pdf
[BibTex] - Lee, K., Paton, N. W., Sakellariou, R., Deelman, E., Fernandes, A. A. A., & Mehta, G. (2009). Adaptive Workflow Processing and Execution in Pegasus. Concurrency and Computation: Practice and Experience, 21(16), 1965–1981. http://pegasus.isi.edu/publications/2009/CCPE-2009.pdf
[BibTex] - Sakellariou, R., Zhao, H., & Deelman, E. (2009). Mapping Workflows on Grid Resources: Experiments with the Montage Workflow. CoreGrid. http://pegasus.isi.edu/publications/2009/coregrid09.pdf
[BibTex]
2008
- Bharathi, S., Chervenak, A., Deelman, E., Mehta, G., Su, M.-H., & Vahi, K. (2008). Characterization of Scientific Workflows. 3rd Workshop on Workflows in Support of Large-Scale Science (WORKS08). http://pegasus.isi.edu/publications/2008/bharathi-works08.pdf
[BibTex] - Callaghan, S., Maechling, P., Deelman, E., Vahi, K., Mehta, G., Juve, G., Milner, K., Graves, R., Field, E., Okaya, D., Gunter, D., Beattie, K., & Jordan, T. (2008). Reducing Time-to-Solution Using Distributed High-Throughput Mega-Workflows - Experiences from SCEC CyberShake. Fourth IEEE International Conference on e-Science (e-Science 2008). http://pegasus.isi.edu/publications/2008/CallaghanS-MegaWorkflowsCyberShake.pdf
[BibTex] - Deelman, E., & Chervenak, A. (2008). Data Management Challenges of Data-Intensive Scientific Workflows. 3rd International Workshop on Workflow Systems in e-Science (WSES 08), in Conjunction with CCGrid 2008. http://pegasus.isi.edu/publications/2008/wses2008.pdf
[BibTex] - Deelman, E., Gannon, D., Shields, M., & Taylor, I. (2008). Workflows and e-Science: An Overview of Workflow System Features and Capabilities. Future Generation Computer Systems. http://dx.doi.org/10.1016/j.future.2008.06.012
[BibTex] - Deelman, E., Singh, G., Livny, M., Berriman, B., & Good, J. (2008). The Cost of Doing Science on the Cloud: The Montage Example. Supercomputing 2008. http://pegasus.isi.edu/publications/2008/deelman_sc08_corrected.pdf
[BibTex] - Hoffa, C., Mehta, G., Freeman, T., Deelman, E., Keahey, K., Berriman, B., & Good, J. (2008). On the Use of Cloud Computing for Scientific Workflows. 3rd International Workshop on Scientific Workflows and Business Workflow Standards in e-Science (SWBES) in Conjunction with Fourth IEEE International Conference on e-Science (e-Science 2008). http://pegasus.isi.edu/publications/2008/Hoffa-CloudComputing.pdf
[BibTex] - Juve, G., & Deelman, E. (2008). Resource Provisioning Options for Large-Scale Scientific Workflows. Third International Workshop on Scientific Workflows and Business Workflow Standards in e-Science (SWBES) in Conjunction with Fourth IEEE International Conference on e-Science (e-Science 2008). http://pegasus.isi.edu/publications/2008/JuveG-ResourceProvisioningOptions.pdf
[BibTex] - Lee, K., Paton, N. W., Sakellariou, R., Deelman, E., Fernandes, A. A. A., & Mehta, G. (2008). Adaptive Workflow Processing and Execution in Pegasus. 3rd International Workshop on Workflow Management and Applications in Grid Environments (WaGe08). http://pegasus.isi.edu/publications/2008/lee-pegasus-wage.pdf
[BibTex] - Miles, S., Groth, P., Deelman, E., Vahi, K., Mehta, G., & Moreau, L. (2008). Provenance: The Bridge Between Experiments and Data. Computing in Science and Engineering, 10(3), 38–46. http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=4488063
[BibTex] - Singh, G., Su, M.-H., Vahi, K., Deelman, E., Berriman, B., Good, J., Katz, D. S., & Mehta, G. (2008). Workflow Task Clustering for Best Effort Systems with Pegasus. Mardi Gras Conference. http://pegasus.isi.edu/publications/2008/MardiGras_v3.pdf
[BibTex]
2007
- Berriman, G. B., Deelman, E., Good, J., Jacob, J. C., Katz, D. S., Laity, A. C., Prince, T. A., Singh, G., & Su, M.-H. (2007). Generating Complex Astronomy Workflows. In Workflows for e-Science.
[BibTex] - Chervenak, A., Deelman, E., Livny, M., Su, M.-H., Schuler, R., Bharathi, S., Mehta, G., & Vahi, K. (2007). Data Placement for Scientific Applications in Distributed Environments. Proceedings of Grid Conference 2007. http://pegasus.isi.edu/publications/grid2007.pdf
[BibTex] - Deelman, E., Mehta, G., Singh, G., Su, M.-H., & Vahi, K. (2007). Pegasus: Mapping Large-Scale Workflows to Distributed Resources. In Workflows for e-Science.
[BibTex] - Gil, Y., Deelman, E., Ellisman, M., Fahringer, T., Fox, G., Gannon, D., Goble, C., Livny, M., Moreau, L., & Myers, J. (2007). Examining the Challenges of Scientific Workflows. IEEE Computer, 40(12), 24–32. http://ieeexplore.ieee.org/search/srchabstract.jsp?arnumber=4404805
[BibTex] - Gil, Y., Ratnakar, V., Deelman, E., Mehta, G., & Kim, J. (2007). Wings for Pegasus: Creating Large-Scale Scientific Applications Using Semantic Representations of Computational Workflows. Proceedings of the 19th Annual Conference on Innovative Applications of Artificial Intelligence (IAAI). http://pegasus.isi.edu/publications/gil-etal-iaai07.pdf
[BibTex] - Kim, J., Deelman, E., Gil, Y., Mehta, G., & Ratnakar, V. (2007). Provenance Trails in the Wings/Pegasus Workflow System. Concurrency and Computation: Practice and Experience, Special Issue on the First Provenance Challenge. http://pegasus.isi.edu/publications/CCPE07-Provenance.pdf
[BibTex] - Maechling, P., Deelman, E., Zhao, L., Graves, R., Mehta, G., Gupta, N., Mehringer, J., Kesselman, C., Callaghan, S., Okaya, D., Francoeur, H., Gupta, V., Cui, Y., Vahi, K., Jordan, T., & Field, E. (2007). SCEC CyberShake Workflows: Automating Probabilistic Seismic Hazard Analysis Calculations. In Workflows for e-Science.
[BibTex] - Mandal, N., Deelman, E., Mehta, G., Su, M.-H., & Vahi, K. (2007). Integrating Existing Scientific Workflow Systems: The Kepler/Pegasus Example. Proceedings of the Second Workshop on Workflows in Support of Large-Scale Science (WORKS07). http://pegasus.isi.edu/publications/kepler-works07.pdf
[BibTex] - Miles, S., Deelman, E., Groth, P., Vahi, K., Mehta, G., & Moreau, L. (2007). Connecting Scientific Data to Scientific Experiments with Provenance. Third IEEE International Conference on e-Science and Grid Computing (e-Science 2007). http://portal.acm.org/citation.cfm?id=1332478.1333573
[BibTex] - Ramakrishnan, A., Singh, G., Zhao, H., Deelman, E., Sakellariou, R., Vahi, K., Blackburn, K., Meyers, D., & Samidi, M. (2007). Scheduling Data-Intensive Workflows onto Storage-Constrained Distributed Resources. Seventh IEEE International Symposium on Cluster Computing and the Grid (CCGrid). http://pegasus.isi.edu/publications/Ramakrishnan-DataIntensiveWorkflow.pdf
[BibTex] - Singh, G., Vahi, K., Ramakrishnan, A., Mehta, G., Deelman, E., Zhao, H., Sakellariou, R., Blackburn, K., Brown, D., Fairhurst, S., Meyers, D., & Berriman, G. B. (2007). Optimizing Workflow Data Footprint. Special Issue of the Scientific Programming Journal Dedicated to Dynamic Computational Workflows: Discovery, Optimisation and Scheduling. http://pegasus.isi.edu/publications/Footprint-final.pdf
[BibTex]
2006
- Deelman, E., Callaghan, S., Field, E., Francoeur, H., Graves, R., Gupta, N., Gupta, V., Jordan, T. H., Kesselman, C., Maechling, P., Mehringer, J., Mehta, G., Okaya, D., Vahi, K., & Zhao, L. (2006). Managing Large-Scale Workflow Execution from Resource Provisioning to Provenance tracking: The CyberShake Example. e-Science 2006. http://pegasus.isi.edu/publications/deelman_Ecybershake.pdf (Best paper award)
[BibTex] - Deelman, E., & Gil, Y. (2006). Managing Large-Scale Scientific Workflows in Distributed Environments: Experiences and Challenges. Workflows in e-Science. http://pegasus.isi.edu/publications/deelman_EworkflowExperiences_v2.pdf
[BibTex] - Lathers, A., Su, M.-H., Kulungowski, A., Lin, A. W., Mehta, G., Peltier, S. T., Deelman, E., & Ellisman, M. H. (2006). Enabling Parallel Scientific Applications with Workflow Tools. Proceedings of Challenges of Large Applications in Distributed Environments (CLADE). http://pegasus.isi.edu/publications/alathers_clade.pdf
[BibTex] - Nefedova, V., Jacob, R., Foster, I., Liu, Z., Liu, Y., Deelman, E., Mehta, G., Su, M.-H., & Vahi, K. (2006). Automating Climate Science: Large Ensemble Simulations on the TeraGrid with the GriPhyN Virtual Data System. e-Science 2006. http://pegasus.isi.edu/publications/Foam-submit.pdf
[BibTex] - Singh, G., Kesselman, C., & Deelman, E. (2006). Application-level Resource Provisioning on the Grid. e-Science 2006. http://pegasus.isi.edu/publications/Singh-AppResProvisioning.pdf
[BibTex] - Taylor, I., Deelman, E., Gannon, D., & Shield, M. (2006). Workflows for e-Science. Springer. http://www.springer.com/computer/communication+networks/book/978-1-84628-519-6
[BibTex] - Vöckler, J.-S., Mehta, G., Zhao, Y., Deelman, E., & Wilde, M. (2006). Kickstarting Remote Applications. Second International Workshop on Grid Computing Environments (GCE06). http://pegasus.isi.edu/publications/kickstart.pdf
[BibTex]
2005
- Blythe, J., Jain, S., Deelman, E., Gil, Y., Vahi, K., Mandal, A., & Kennedy, K. (2005). Task Scheduling Strategies for Workflow-based Applications in Grids. CCGrid 2005. http://pegasus.isi.edu/publications/ccgrid05-correction.pdf
[BibTex] - Deelman, E., Singh, G., Su, M.-H., Blythe, J., Gil, Y., Kesselman, C., Mehta, G., Vahi, K., Berriman, G. B., Good, J., Laity, A., Jacob, J. C., & Katz, D. S. (2005). Pegasus: a Framework for Mapping Complex Scientific Workflows onto Distributed Systems. Scientific Programming Journal, 13(3), 219–237. http://pegasus.isi.edu/publications/Sci.pdf
[BibTex] - Katz, D. S., Jacob, J. C., Berriman, G. B., Good, J., Laity, A. C., Deelman, E., Kesselman, C., Singh, G., Su, M.-H., & Prince, T. A. (2005). Comparison of Two Methods for Building Astronomical Image Mosaics on a Grid. International Conference on Parallel Processing (ICPP). http://pegasus.isi.edu/publications/Comp.pdf
[BibTex] - Maechling, P., Chalupsky, H., Dougherty, M., Deelman, E., Gil, Y., Gullapalli, S., Gupta, V., Kesselman, C., Kim, J., Mehta, G., Mendenhall, B., Russ, T. A., Singh, G., Spraragen, M., Staples, G., & Vahi, K. (2005). Simplifying construction of complex workflows for non-expert users of the Southern California Earthquake Center Community Modeling Environment. SIGMOD Record, 34(3), 24–30. http://pegasus.isi.edu/publications/scec.pdf
[BibTex] - Singh, G., Deelman, E., Mehta, G., Vahi, K., Su, M.-H., Berriman, G. B., Good, J., Jacob, J. C., Katz, D. S., Lazzarini, A., Blackburn, K., & Koranda, S. (2005). The Pegasus Portal: Web Based Grid Computing. The 20th Annual ACM Symposium on Applied Computing. http://pegasus.isi.edu/publications/Pegasus_Portal_final2.pdf
[BibTex] - Singh, G., Kesselman, C., & Deelman, E. (2005). Optimizing Grid-Based Workflow Execution. Journal of Grid Computing, 3(3-4), 201–219. http://pegasus.isi.edu/publications/Opt.pdf
[BibTex]
2004
- Deelman, E., Blythe, J., Gil, Y., Kesselman, C., Mehta, G., Patil, S., Su, M.-H., Vahi, K., & Livny, M. (2004). Pegasus: Mapping Scientific Workflows onto the Grid. Across Grids Conference. http://pegasus.isi.edu/publications/ewa/Pegasus_final.pdf
[BibTex] - Gil, Y., Deelman, E., Blythe, J., Kesselman, C., & Tangmurarunkit, H. (2004). Artificial Intelligence and Grids: Workflow Planning and Beyond. IEEE Intelligent Systems. http://pegasus.isi.edu/publications/ewa/ieee_is04.pdf
[BibTex]
2003
- Berriman, G. B., Good, J. C., Laity, A. C., Bergou, A., Jacob, J. C., Katz, D. S., Deelman, E., Kesselman, C., Singh, G., Su, M.-H., & Williams, R. (2003). Montage: A Grid Enabled Image Mosaic Service for the National Virtual Observatory. ADASS XIII. http://pegasus.isi.edu/publications/ewa/adass_03.pdf
[BibTex] - Blythe, J., Cavanaugh, R., Deelman, E., Foster, I., Jang, S.-H., Kesselman, C., Marzullo, K., Moore, R., Taylor, V., & Zhang, X. (2003). Types of Editors and Specifications (Technical Report 2004-23; Number Technical Report 2004-23). GriPhyN. http://pegasus.isi.edu/publications/editors.pdf
[BibTex] - Blythe, J., Deelman, E., & Gil, Y. (2003). Planning for workflow construction and maintenance on the Grid. 2003 ICAPS Workshop on Planning for Web Services. http://pegasus.isi.edu/publications/ewa/icaps_workshop.pdf
[BibTex] - Blythe, J., Deelman, E., Gil, Y., & Kesselman, C. (2003). Transparent Grid Computing: a Knowledge-Based Approach. IAAI. http://pegasus.isi.edu/publications/ewa/iaai_2003.pdf
[BibTex] - Blythe, J., Deelman, E., Gil, Y., Kesselman, C., Agarwal, A., Mehta, G., & Vahi, K. (2003). The Role of Planning in Grid Computing. ICAPS. http://pegasus.isi.edu/publications/ewa/icaps03.pdf
[BibTex] - Deelman, E., Blythe, J., Gil, Y., & Kesselman, C. (2003). Workflow Management in GriPhyN. In J. S. J. Nabrzyski & J. Weglarz (Eds.), Grid Resource Management. Kluwer. http://pegasus.isi.edu/publications/ewa/grm_chapter.pdf
[BibTex] - Deelman, E., Blythe, J., Gil, Y., Kesselman, C., Koranda, S., Lazzarini, A., Mehta, G., Papa, M. A., & Vahi, K. (2003). Pegasus and the Pulsar Search: From Metadata to Execution on the Grid. Applications Grid Workshop, PPAM 2003. http://pegasus.isi.edu/publications/ewa/agw_ppam2003.pdf
[BibTex] - Deelman, E., Blythe, J., Gil, Y., Kesselman, C., Mehta, G., Vahi, K., Blackburn, K., Lazzarini, A., Arbree, A., Cavanaugh, R., & Koranda, S. (2003). Mapping Abstract Complex Workflows onto Grid Environments. Journal of Grid Computing, 1(1), 25–39. http://pegasus.isi.edu/publications/ewa/jogc.pdf
[BibTex] - Deelman, E., Blythe, J., Gil, Y., Kesselman, C., Mehta, G., Vahi, K., Koranda, S., Lazzarini, A., & Papa, M. A. (2003). From Metadata to Execution on the Grid Pegasus and the Pulsar Search (Technical Report 2003-15; Number Technical Report 2003-15). GriPhyN. http://pegasus.isi.edu/publications/ewa/griphyn_2003_15.pdf
[BibTex] - Deelman, E., Foster, I., Kesselman, C., Moore, R., & Ranka, S. (2003). Overall Architecture and Control Flow (Technical Report 2004-24; Number Technical Report 2004-24). GriPhyN. http://pegasus.isi.edu/publications/architecture.pdf
[BibTex] - Deelman, E., Plante, R., Kesselman, C., Singh, G., Su, M.-H., Greene, G., Hanisch, R., Gaffney, N., Volpicelli, A., Annis, J., Sekhri, V., Budavari, T., Nieto-Santisteban, M., O’Mullane, W., Bohlender, D., McGlynn, T., Rots, A., & Pevunova, O. (2003). Grid-Based Galaxy Morphology Analysis for the National Virtual Observatory. Supercomputing 2003. http://pegasus.isi.edu/publications/ewa/galmorph_sc03.pdf
[BibTex] - Singh, G., & Deelman, E. (2003). Montage on the Grid (Technical Report; Number Technical Report). NVO. http://pegasus.isi.edu/publications/ewa/montage_pegasus.pdf
[BibTex] - Williams, R., Berriman, G. B., Deelman, E., Good, J., Jacob, J. C., Kesselman, C., Lonsdale, C., Oliver, S., & Prince, T. A. (2003). Multi-Wavelength Image Space: Another Grid-Enabled Science. Journal of Concurrency and Computation: Practice and Experience. http://pegasus.isi.edu/publications/ewa/montage_paper.pdf
[BibTex]
2002
- Deelman, E., Blythe, J., Gil, Y., & Kesselman, C. (2002). Pegasus: Planning for Execution in Grids (Technical Report 2002-20; Number Technical Report 2002-20). GriPhyN. http://pegasus.isi.edu/publications/ewa/pegasus_overview.pdf
[BibTex] - Deelman, E., Kesselman, C., Mehta, G., Meshkat, L., Pearlman, L., Blackburn, K., Ehrens, P., Lazzarini, A., Williams, R., & Koranda, S. (2002). GriPhyN and LIGO, Building a Virtual Data Grid for Gravitational Wave Scientists. High Performance Distributed Computing (HPDC). http://pegasus.isi.edu/publications/ewa/hpdc11.pdf
[BibTex]